Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.9e-100 367.9 193 100.0
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 3.3e-96 355.1 193 96.4
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.5e-93 346.3 193 94.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 3.2e-91 338.6 193 91.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.7e-82 308.9 195 85.6
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.6e-79 299.7 195 85.6
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.7e-71 273.1 195 80.0
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 5.1e-65 251.5 198 73.2
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.0e-64 249.6 198 72.2
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.7e-63 245.4 197 72.1
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 5.3e-62 241.5 202 72.3
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.9e-59 233.0 202 70.3
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.2e-59 232.3 200 68.5
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 8.0e-58 227.6 197 68.0
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.8e-57 226.5 194 66.5
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 2.3e-57 226.1 197 67.5
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.3e-57 226.1 180 73.3
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 3.0e-57 225.7 199 68.3
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 3.0e-57 225.7 190 68.4
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 6.7e-57 224.6 199 67.3
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 6.7e-57 224.6 204 66.7
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.1e-56 223.8 199 67.8
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.0e-56 223.0 196 65.8
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 2.0e-56 223.0 201 66.7
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 3.3e-56 222.2 198 66.7
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 4.4e-56 221.9 140 84.3
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 7.4e-56 221.1 141 83.0
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 9.7e-56 220.7 198 66.7
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 9.7e-56 220.7 172 72.1
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.3e-55 220.3 192 66.7
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.2e-55 219.5 196 65.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 2.2e-55 219.5 195 64.6
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 2.2e-55 219.5 198 66.7
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 2.8e-55 219.2 198 64.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.8e-55 219.2 197 64.0
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.8e-55 219.2 199 64.8
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 3.7e-55 218.8 176 69.3
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 4.8e-55 218.4 197 64.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.8e-55 218.4 196 66.8
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 4.8e-55 218.4 196 66.8
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 6.3e-55 218.0 164 73.8
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 8.2e-55 217.6 202 64.4
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.1e-54 217.2 193 65.3
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 1.1e-54 217.2 193 64.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.8e-54 216.5 179 67.6
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.8e-54 216.5 196 64.3
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.8e-54 216.5 196 64.3
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.8e-54 216.5 195 66.7
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.8e-54 216.5 192 66.1
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 2.4e-54 216.1 170 71.2
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 2.4e-54 216.1 194 64.9
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.1e-54 215.7 143 76.2
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.3e-54 214.9 137 78.8
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 5.3e-54 214.9 137 81.0
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.2e-53 213.8 166 71.7
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.6e-53 213.4 197 65.0
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.6e-53 212.6 178 67.4
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 3.5e-53 212.2 163 71.8
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 4.5e-53 211.8 179 67.0
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 4.5e-53 211.8 176 71.6
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 4.5e-53 211.8 196 62.8
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 5.9e-53 211.5 166 70.5
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 7.7e-53 211.1 190 65.8
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 7.7e-53 211.1 161 72.0
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 7.7e-53 211.1 162 69.1
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 7.7e-53 211.1 137 81.8
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 7.7e-53 211.1 148 73.6
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.0e-52 210.7 139 77.7
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.0e-52 210.7 197 63.5
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.7e-52 209.9 177 64.4
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-52 209.5 168 70.2
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.2e-52 209.5 162 73.5
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.9e-52 209.1 192 65.1
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 3.8e-52 208.8 166 68.7
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 6.5e-52 208.0 148 76.4
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 6.5e-52 208.0 148 76.4
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.5e-52 208.0 197 61.4
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 6.5e-52 208.0 196 64.8
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 6.5e-52 208.0 183 64.5
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 8.5e-52 207.6 147 76.2
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 8.5e-52 207.6 148 76.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 8.5e-52 207.6 148 76.4
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 8.5e-52 207.6 196 62.8
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 8.5e-52 207.6 196 62.8
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.5e-51 206.8 195 64.1
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.9e-51 206.5 193 64.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.5e-51 206.1 184 66.8
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 3.2e-51 205.7 139 79.1
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 4.2e-51 205.3 186 65.6
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 4.2e-51 205.3 174 67.8
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.2e-51 205.3 196 62.8
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 5.5e-51 204.9 171 66.1
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 5.5e-51 204.9 188 62.8
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 9.4e-51 204.1 198 61.6
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.2e-50 203.8 193 61.1
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 1.6e-50 203.4 172 68.0
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 2.1e-50 203.0 166 71.7
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 2.7e-50 202.6 197 63.5
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.7e-50 202.6 147 74.1
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.7e-50 202.6 194 60.8
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.6e-50 202.2 194 63.9
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.6e-50 202.2 168 68.5
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 3.6e-50 202.2 167 70.1
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.6e-50 202.2 180 66.7
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 4.7e-50 201.8 139 77.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 8.0e-50 201.1 148 72.3
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 8.0e-50 201.1 181 65.7
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 8.0e-50 201.1 152 73.7
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.0e-49 200.7 173 67.6
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.3e-49 199.5 173 67.1
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.3e-49 199.5 196 60.2
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.3e-49 199.5 186 62.9
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 3.0e-49 199.1 193 61.1
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 3.0e-49 199.1 167 67.7
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 5.2e-49 198.4 194 61.9
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.0e-48 196.4 172 66.9
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.7e-47 193.4 177 66.1
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.2e-47 193.0 179 64.2
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 2.2e-47 193.0 145 74.5
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 6.3e-47 191.4 115 85.2
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 6.3e-47 191.4 172 64.0
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.8e-46 189.9 110 87.3
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 2.4e-46 189.5 138 73.9
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 2.4e-46 189.5 164 65.9
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 3.1e-46 189.1 189 60.8
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 5.3e-46 188.3 140 74.3
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.0e-45 186.4 115 82.6
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.0e-45 186.4 115 82.6
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 2.0e-45 186.4 196 60.7
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 3.5e-45 185.7 139 66.9
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.9e-45 184.9 193 58.0
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 7.7e-45 184.5 109 85.3
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.7e-44 183.3 174 60.9
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.5e-43 180.3 113 83.2
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-43 179.5 138 67.4
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 2.5e-43 179.5 197 56.3
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-42 176.4 178 59.0
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.8e-41 173.3 168 58.9
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.8e-41 173.3 108 76.9
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.2e-40 170.6 169 56.8
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.2e-40 170.6 183 56.3
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 4.4e-40 168.7 172 58.1
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.3e-39 167.2 111 77.5
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.3e-39 167.2 196 51.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.4e-38 162.9 195 54.9
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 5.9e-37 158.3 342 37.1
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 7.7e-37 157.9 110 70.9
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.0e-36 157.5 169 57.4
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.3e-36 156.4 169 56.8
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 5.0e-36 155.2 139 65.5
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.5e-35 152.9 112 67.9
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 5.5e-35 151.8 153 61.4
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 6.1e-34 148.3 172 56.4
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 3.7e-31 139.0 172 48.8
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.4e-25 120.6 160 50.6
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 3.1e-25 119.4 105 55.2
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 6.8e-25 118.2 142 47.9
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 5.8e-24 115.2 88 73.9
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.9e-23 112.1 128 57.8
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 5.4e-22 108.6 91 63.7
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 9.2e-22 107.8 94 61.7
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 4.6e-21 105.5 86 64.0
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-20 103.6 87 65.5
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-19 100.9 87 64.4
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.1e-19 100.9 87 64.4
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.2e-15 86.7 87 55.2
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 9.2e-14 81.3 44 95.5
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.1e-11 74.3 44 81.8
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 4.3e-11 72.4 49 77.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 5.2e-09 65.5 38 84.2


User provided reference genes

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