Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.3e-46 188.0 92 100.0
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.8e-44 182.2 92 94.6
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 4.5e-43 177.6 92 93.5
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 4.2e-41 171.0 92 90.2
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 5.5e-41 170.6 92 89.1
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.9e-39 164.5 92 85.9
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 4.7e-32 141.0 91 75.8
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.4e-31 139.4 90 74.4
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.3e-31 138.7 92 72.8
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.0e-31 137.9 91 73.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.0e-31 137.9 91 69.2
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 6.7e-31 137.1 91 78.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 6.7e-31 137.1 91 78.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 6.7e-31 137.1 91 78.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 6.7e-31 137.1 91 78.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.5e-30 136.0 91 71.4
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.6e-30 135.2 92 72.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.3e-30 134.8 91 75.8
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.5e-30 133.7 91 72.5
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 7.5e-30 133.7 91 73.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 7.5e-30 133.7 91 71.4
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.3e-29 132.9 91 75.8
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-29 132.5 91 73.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-29 132.5 92 72.8
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-29 132.1 91 75.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 6.3e-29 130.6 91 67.0
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 8.2e-29 130.2 91 72.5
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 8.2e-29 130.2 91 72.5
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 8.2e-29 130.2 91 73.6
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-28 129.8 91 72.5
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-28 129.8 91 72.5
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-28 129.8 91 72.5
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-28 129.8 91 72.5
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.4e-28 129.4 90 70.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.8e-28 129.0 91 70.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.4e-28 128.6 91 69.2
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 2.4e-28 128.6 91 70.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.1e-28 128.3 90 66.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 3.1e-28 128.3 95 68.4
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.1e-28 128.3 91 68.1
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.1e-28 127.9 91 67.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.1e-28 127.9 91 67.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 5.3e-28 127.5 90 66.7
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.3e-28 127.5 90 64.4
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 7.0e-28 127.1 95 67.4
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 9.1e-28 126.7 91 68.1
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 9.1e-28 126.7 89 69.7
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.2e-27 126.3 90 66.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.6e-27 125.9 95 67.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.0e-27 125.6 89 67.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.0e-27 125.6 91 69.2
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 2.7e-27 125.2 91 65.9
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 3.5e-27 124.8 90 68.9
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.9e-27 124.0 90 65.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 7.7e-27 123.6 91 69.2
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.7e-26 122.5 91 67.0
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.2e-26 122.1 91 67.0
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.9e-26 121.7 92 66.3
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 3.8e-26 121.3 97 64.9
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 5.0e-26 120.9 92 64.1
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 8.5e-26 120.2 91 63.7
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.1e-25 119.8 91 64.8
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.1e-25 119.8 91 63.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.1e-25 119.8 91 63.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.5e-25 119.4 94 64.9
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.9e-25 119.0 92 65.2
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.9e-25 119.0 91 62.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 5.5e-25 117.5 94 62.8
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 7.2e-25 117.1 91 70.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 9.4e-25 116.7 91 63.7
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 9.4e-25 116.7 89 64.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.6e-24 115.9 92 63.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.1e-24 115.5 95 64.2
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.7e-24 115.2 83 71.1
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 3.0e-23 111.7 94 59.6
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 4.0e-23 111.3 91 60.4
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 8.8e-23 110.2 91 61.5
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.2e-22 109.8 92 57.6
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-22 109.0 91 58.2
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.6e-22 108.6 91 58.2
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 5.7e-22 107.5 88 59.1
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.2e-21 105.5 84 63.1
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.8e-21 105.1 89 56.2
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 3.7e-21 104.8 91 60.4
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 3.7e-21 104.8 91 60.4
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-21 104.4 79 64.6
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 6.3e-21 104.0 79 65.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 8.3e-21 103.6 91 58.2
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.4e-20 102.1 87 60.9
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.1e-20 101.3 91 58.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 5.4e-20 100.9 87 59.8
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.2e-19 99.8 76 60.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.9e-19 97.4 80 60.0
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.9e-18 95.1 91 56.0
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 3.8e-18 94.7 91 54.9
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 9.5e-17 90.1 77 54.5
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.6e-16 89.4 80 52.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.6e-16 89.4 80 52.5
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.6e-16 89.4 85 56.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.0e-15 86.7 85 54.1
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.0e-15 84.7 47 80.9
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 8.8e-15 83.6 83 51.8
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.5e-14 82.8 83 51.8
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.2e-13 79.0 87 50.6
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.4e-12 76.3 90 47.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.1e-12 74.7 63 54.0
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 4.1e-12 74.7 79 44.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 7.0e-12 73.9 87 46.0
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-11 73.2 66 57.6
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.6e-11 72.8 89 47.2
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.0e-11 72.4 75 48.0
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 3.5e-11 71.6 86 45.3
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 4.5e-11 71.2 80 48.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 4.5e-11 71.2 80 48.8
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 7.8e-11 70.5 72 48.6
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.0e-10 70.1 75 50.7
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.0e-10 70.1 70 50.0
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.3e-10 69.7 81 44.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-10 69.3 70 50.0
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-10 69.3 70 50.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 6.6e-10 67.4 69 49.3
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 8.6e-10 67.0 70 48.6
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.1e-09 66.6 85 41.2
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.5e-09 66.2 69 49.3
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.9e-09 65.9 83 47.0
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.5e-09 65.5 88 46.6
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.3e-09 65.1 83 44.6
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.3e-09 65.1 62 50.0
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.3e-09 65.1 67 47.8
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.3e-09 65.1 63 55.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.3e-09 64.7 62 51.6
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.3e-09 64.7 60 53.3
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.6e-09 64.3 86 43.0
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.6e-09 64.3 86 43.0
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.6e-09 64.3 86 43.0
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 5.6e-09 64.3 92 40.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 7.3e-09 63.9 62 53.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 7.3e-09 63.9 62 51.6
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 7.3e-09 63.9 70 47.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.3e-09 63.9 62 50.0
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 7.3e-09 63.9 69 44.9
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 9.5e-09 63.5 67 46.3
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.2e-08 63.2 62 45.2
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.6e-08 62.8 67 47.8
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-08 62.8 72 43.1
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.6e-08 62.8 62 50.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.1e-08 62.4 63 52.4
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 4.7e-08 61.2 63 46.0
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.0e-07 60.1 75 45.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.0e-07 60.1 75 44.0
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 1.8e-07 59.3 39 66.7
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.8e-07 59.3 64 48.4
Peaxi162Scf00045g02036 Petunia axillaris HOM05D003524 ORTHO05D003988 4.0e-07 58.2 51 64.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 4.0e-07 58.2 67 46.3
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 5.2e-07 57.8 60 46.7
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 8.9e-07 57.0 44 61.4
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.5e-06 56.2 62 43.5
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.6e-06 55.5 59 42.4
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.7e-06 54.3 59 40.7
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 7.5e-06 53.9 60 45.0
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 9.8e-06 53.5 69 43.5


User provided reference genes

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