Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.1e-98 363.2 179 100.0
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 3.3e-98 361.7 179 99.4
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.8e-97 358.6 179 98.9
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.6e-95 352.1 179 96.1
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 4.4e-95 351.3 179 96.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.8e-95 350.9 179 96.6
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 9.5e-90 333.6 177 89.8
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.1e-88 328.6 176 90.9
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.0e-88 328.2 169 94.7
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 6.8e-88 327.4 176 88.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.4e-87 325.1 177 89.8
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 4.4e-87 324.7 176 88.1
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.9e-87 323.6 176 87.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.3e-86 323.2 176 87.5
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.3e-86 323.2 176 88.6
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.9e-86 322.0 176 89.2
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.8e-86 321.6 178 88.2
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.8e-86 321.6 176 88.1
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.9e-86 321.2 176 86.9
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.4e-86 320.9 176 86.9
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.4e-86 320.9 176 88.1
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 6.4e-86 320.9 176 88.1
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 6.4e-86 320.9 175 88.0
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.4e-86 320.5 177 85.9
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.4e-85 319.7 176 86.9
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.9e-85 319.3 176 87.5
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.4e-85 318.9 176 86.9
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 3.2e-85 318.5 176 89.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.2e-85 318.2 176 86.4
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 4.2e-85 318.2 176 86.9
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.2e-85 318.2 176 86.9
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.1e-85 317.4 176 86.9
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 7.1e-85 317.4 176 89.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-84 316.2 176 86.4
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.5e-84 315.1 176 87.5
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.6e-84 314.7 176 86.9
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.6e-84 314.7 176 86.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 6.0e-84 314.3 177 85.9
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.3e-83 313.2 176 86.4
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.3e-83 313.2 176 87.5
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.3e-83 313.2 176 85.8
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.7e-83 312.8 177 85.9
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.3e-83 312.4 176 84.7
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.3e-83 312.4 176 84.7
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.9e-83 311.6 177 85.3
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 5.1e-83 311.2 175 85.1
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 8.7e-83 310.5 176 85.2
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 8.7e-83 310.5 176 85.8
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 8.7e-83 310.5 177 84.2
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 83.0
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.5e-82 309.7 167 90.4
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.9e-82 309.3 176 85.8
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 2.5e-82 308.9 175 86.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 85.8
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 85.2
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.3e-82 308.1 176 84.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.3e-82 308.1 176 84.1
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 5.6e-82 307.8 176 84.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.6e-82 307.8 176 84.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 5.6e-82 307.8 176 83.0
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 7.3e-82 307.4 176 81.8
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 9.6e-82 307.0 168 89.3
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 9.6e-82 307.0 177 84.7
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 2.8e-81 305.4 176 84.1
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.6e-81 305.1 176 85.2
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.6e-81 305.1 176 81.8
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 6.2e-81 304.3 178 82.6
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.1e-80 303.5 170 85.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.4e-80 303.1 178 82.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.8e-80 302.8 177 82.5
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.8e-80 302.8 178 81.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 80.9
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 82.0
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 82.0
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 4.0e-80 301.6 177 84.2
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.0e-80 301.6 176 82.4
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 5.3e-80 301.2 177 82.5
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 6.9e-80 300.8 176 84.1
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 6.9e-80 300.8 169 85.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 9.0e-80 300.4 178 80.3
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 9.0e-80 300.4 176 82.4
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.2e-79 300.1 178 80.9
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.5e-79 299.7 170 85.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.0e-79 299.3 168 85.1
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 4.4e-79 298.1 177 83.1
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 7.6e-79 297.4 177 83.1
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 7.6e-79 297.4 177 84.2
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.3e-78 296.6 178 81.5
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.3e-78 296.6 198 76.8
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.7e-78 296.2 179 80.4
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.7e-78 296.2 179 80.4
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.7e-78 296.2 179 80.4
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.7e-78 296.2 165 86.7
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.2e-78 295.8 165 86.1
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-78 295.8 169 85.2
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.2e-78 295.8 168 85.1
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 2.9e-78 295.4 168 85.7
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.8e-78 295.0 177 82.5
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 4.9e-78 294.7 179 79.9
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.9e-78 294.7 177 81.4
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 4.9e-78 294.7 169 84.6
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 6.4e-78 294.3 200 75.0
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.1e-77 293.5 178 80.9
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.4e-77 293.1 177 81.9
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 81.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 3.2e-77 292.0 178 78.7
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.2e-76 290.0 168 85.1
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 179 81.6
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 179 81.6
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 81.4
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.5e-76 288.5 170 83.5
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.5e-76 288.5 178 79.8
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 4.6e-76 288.1 176 81.2
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 6.0e-76 287.7 170 81.8
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.7e-75 286.2 168 83.9
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 3.0e-75 285.4 178 80.3
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.7e-75 283.9 177 80.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 7.3e-74 280.8 168 81.5
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 2.1e-73 279.3 176 77.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.1e-73 279.3 169 81.1
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 2.1e-73 279.3 178 78.1
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.8e-73 278.9 176 79.0
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.6e-73 278.5 161 84.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 5.4e-69 264.6 258 57.0
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.1e-68 262.7 150 86.7
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.3e-67 260.0 165 74.5
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 5.1e-67 258.1 177 72.3
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 6.7e-67 257.7 176 70.5
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 4.8e-65 251.5 148 83.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 5.8e-63 244.6 165 69.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.1e-61 240.4 176 71.0
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 6.0e-60 234.6 166 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.8e-59 233.0 169 65.7
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.3e-59 232.6 166 66.3
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.4e-48 196.8 165 57.6
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-48 196.1 135 73.3
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 4.5e-47 191.8 172 60.5
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 9.7e-42 174.1 100 87.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.0e-39 166.4 98 82.7
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 7.2e-37 157.9 116 69.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 5.3e-32 141.7 80 85.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.2e-28 130.6 168 41.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 6.1e-28 128.3 179 38.0
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-26 123.2 75 80.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-26 123.2 75 80.0
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.3e-26 122.5 64 89.1
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 6.5e-22 108.2 100 57.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.5e-22 107.8 57 86.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.7e-20 102.8 62 79.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.7e-20 102.1 54 87.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 4.0e-19 99.0 51 90.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.2e-19 98.6 83 63.9
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.1e-16 90.9 165 35.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 5.4e-16 88.6 172 32.0
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-13 80.9 90 48.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.8e-11 73.6 88 47.7
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.5e-10 70.5 51 68.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.0e-10 70.1 45 71.1
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.4e-10 69.3 37 86.5
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 9.8e-10 67.8 38 86.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 8.3e-09 64.7 50 64.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 8.3e-09 64.7 64 54.7
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-08 63.9 38 78.9
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.4e-08 63.9 38 78.9
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 2.4e-08 63.2 43 69.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 9.1e-08 61.2 29 93.1
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 1.6e-07 60.5 43 69.8
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.9e-07 58.5 42 64.3


User provided reference genes

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