Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 5.0e-39 164.9 151 100.0
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.0e-36 157.1 152 83.6
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 1.8e-33 146.4 151 78.8
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 4.5e-24 115.2 77 81.8
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 1.4e-22 110.2 77 76.6
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 2.1e-21 106.3 65 84.6
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 7.7e-16 87.8 70 67.1
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 1.3e-15 87.0 72 65.3
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 3.8e-15 85.5 76 61.8
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 6.5e-15 84.7 61 72.1
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 8.5e-15 84.3 70 62.9
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 3.2e-14 82.4 70 61.4
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 3.2e-14 82.4 72 61.1
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 5.5e-14 81.6 63 66.7
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.6e-13 80.1 70 60.0
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 2.1e-13 79.7 67 58.2
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 2.1e-13 79.7 72 61.1
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 2.1e-13 79.7 62 69.4
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.7e-13 78.6 60 66.7
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 4.7e-13 78.6 67 67.2
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 6.1e-13 78.2 64 64.1
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 6.1e-13 78.2 71 60.6
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 6.1e-13 78.2 60 65.0
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 6.1e-13 78.2 71 54.9
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 8.0e-13 77.8 71 57.7
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 1.0e-12 77.4 69 62.3
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 1.4e-12 77.0 77 49.4
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.4e-12 77.0 71 59.2
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.8e-12 76.6 58 72.4
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 1.8e-12 76.6 66 63.6
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 2.3e-12 76.3 68 66.2
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 2.3e-12 76.3 62 64.5
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 3.0e-12 75.9 61 65.6
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 3.0e-12 75.9 67 61.2
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 4.0e-12 75.5 69 52.2
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 5.2e-12 75.1 70 60.0
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 5.2e-12 75.1 46 82.6
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 5.2e-12 75.1 62 67.7
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 5.2e-12 75.1 64 65.6
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 6.7e-12 74.7 75 57.3
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 6.7e-12 74.7 73 57.5
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 6.7e-12 74.7 73 57.5
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 6.7e-12 74.7 76 56.6
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.2e-11 73.9 61 63.9
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.2e-11 73.9 61 65.6
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 3.3e-11 72.4 61 59.0
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 4.4e-11 72.0 47 76.6
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 4.4e-11 72.0 60 68.3
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 4.4e-11 72.0 60 68.3
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 4.4e-11 72.0 54 63.0
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 5.7e-11 71.6 65 63.1
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 5.7e-11 71.6 70 44.3
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 7.5e-11 71.2 57 71.9
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 7.5e-11 71.2 54 55.6
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 7.5e-11 71.2 69 58.0
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 7.5e-11 71.2 63 60.3
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.3e-10 70.5 57 71.9
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 2.2e-10 69.7 66 60.6
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 3.7e-10 68.9 60 61.7
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.8e-10 68.6 71 59.2
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 4.8e-10 68.6 69 55.1
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 8.2e-10 67.8 73 54.8
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 1.8e-09 66.6 47 72.3
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 1.8e-09 66.6 46 71.7
Lalb_Chr19g0135631 Lupinus albus HOM05D007783 ORTHO05D009740 2.4e-09 66.2 64 53.1
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 4.1e-09 65.5 70 52.9
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 1.2e-08 63.9 49 63.3
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 1.6e-08 63.5 47 70.2
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 2.7e-08 62.8 69 56.5
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 7.7e-08 61.2 62 53.2
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 7.7e-08 61.2 63 54.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 7.7e-08 61.2 64 53.1
SGA_v2.0_scaffold49G18329 Striga asiatica HOM05D007783 ORTHO05D009740 1.0e-07 60.8 59 55.9
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 1.7e-07 60.1 69 47.8
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 2.2e-07 59.7 46 63.0
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 2.2e-07 59.7 46 63.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 2.2e-07 59.7 46 63.0
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 2.2e-07 59.7 46 63.0
PSO210G2314 Papaver somniferum HOM05D007783 ORTHO05D009740 2.2e-07 59.7 77 46.8
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 2.9e-07 59.3 49 59.2
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 5.0e-07 58.5 46 60.9
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 5.0e-07 58.5 74 50.0
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 8.5e-07 57.8 67 55.2
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 2.5e-06 56.2 70 51.4
Glyma.12G197200 Glycine max HOM05D007783 ORTHO05D009740 3.2e-06 55.8 69 52.2


User provided reference genes

Program Settings