Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 8.7e-203 710.3 415 100.0
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.5e-178 629.0 418 91.4
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 2.5e-178 629.0 418 91.6
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 3.7e-153 545.4 418 81.6
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.8e-131 473.4 281 89.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 4.1e-120 435.6 319 71.8
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 8.6e-118 427.9 319 71.5
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.1e-117 427.6 383 72.1
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.1e-117 427.6 319 70.2
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 4.3e-117 425.6 335 68.1
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.2e-116 421.8 417 59.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 6.8e-115 418.3 336 67.9
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 2.6e-114 416.4 406 64.3
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 4.4e-114 415.6 417 61.2
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.4e-114 415.6 416 62.7
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.7e-113 413.7 323 67.8
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 3.8e-113 412.5 321 68.5
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 6.4e-113 411.8 312 68.9
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.1e-112 411.0 314 69.7
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.9e-112 410.2 312 68.9
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 4.1e-112 409.1 347 63.4
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 5.4e-112 408.7 312 69.9
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 7.1e-112 408.3 310 70.0
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 7.1e-112 408.3 326 67.5
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 7.1e-112 408.3 312 68.6
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.1e-111 406.8 310 68.7
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 4.6e-111 405.6 313 68.1
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 6.0e-111 405.2 322 67.1
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.0e-110 404.4 320 66.9
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.5e-109 400.6 324 66.4
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 3.3e-109 399.4 323 66.6
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 9.6e-109 397.9 420 60.7
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 4.7e-108 395.6 410 59.5
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 6.2e-108 395.2 319 66.1
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.8e-107 393.7 315 67.3
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.4e-107 393.3 225 93.3
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 8.9e-107 391.3 324 65.4
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 2.0e-106 390.2 322 67.1
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-106 390.2 317 65.9
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.4e-106 389.0 311 67.5
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 7.6e-106 388.3 320 64.4
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 9.9e-106 387.9 428 56.8
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.3e-105 387.5 419 56.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.7e-105 387.1 322 66.5
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.2e-105 386.7 320 63.8
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 6.4e-105 385.2 311 64.0
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.4e-104 384.0 321 65.1
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.4e-104 384.0 322 65.5
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 2.4e-104 383.3 407 57.0
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 4.2e-104 382.5 330 64.8
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 5.4e-104 382.1 311 65.9
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 9.3e-104 381.3 314 65.3
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.1e-103 380.2 323 62.5
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.5e-103 379.4 352 61.1
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 7.8e-103 378.3 323 62.5
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.3e-102 377.5 420 55.5
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.3e-102 377.5 311 63.0
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.7e-102 377.1 324 61.4
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 2.3e-102 376.7 315 62.5
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 3.0e-102 376.3 311 62.4
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 3.0e-102 376.3 315 62.5
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 6.6e-102 375.2 427 55.3
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 6.6e-102 375.2 420 57.6
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 8.7e-102 374.8 311 62.1
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.9e-101 373.6 416 55.5
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 2.5e-101 373.2 323 61.9
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 2.5e-101 373.2 323 61.9
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 2.5e-101 373.2 421 60.1
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 3.3e-101 372.9 311 61.7
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 3.3e-101 372.9 418 53.8
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 7.3e-101 371.7 433 52.9
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 7.3e-101 371.7 313 64.2
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 9.6e-101 371.3 331 60.4
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 9.6e-101 371.3 311 62.1
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 9.6e-101 371.3 409 58.4
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.3e-100 370.9 417 55.2
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.3e-100 370.9 277 68.6
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-100 370.9 312 63.5
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.8e-100 369.8 417 55.6
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.6e-100 369.4 311 61.7
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 3.6e-100 369.4 413 55.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.8e-100 369.0 311 62.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 6.2e-100 368.6 325 59.1
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.1e-99 366.3 411 56.9
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 3.1e-99 366.3 431 54.1
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.0e-99 365.9 411 56.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 6.9e-99 365.2 311 62.4
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.5e-98 364.0 290 64.8
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 3.4e-98 362.8 406 53.2
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 7.6e-98 361.7 330 60.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 2.9e-97 359.8 288 66.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 6.4e-97 358.6 311 61.1
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 6.4e-97 358.6 412 55.3
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.1e-96 357.8 413 55.0
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.4e-96 357.5 293 65.2
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 3.2e-96 356.3 307 62.5
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 4.2e-96 355.9 417 55.2
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.6e-95 354.0 412 57.0
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 4.6e-95 352.4 346 56.9
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.3e-94 350.9 346 57.8
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.6e-92 344.0 415 53.5
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 4.8e-92 342.4 325 59.1
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 8.4e-89 331.6 314 56.7
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 2.4e-88 330.1 307 58.6
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 7.1e-88 328.6 310 56.1
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.3e-84 317.8 309 55.0
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.1e-83 314.7 320 53.4
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.3e-83 312.4 519 43.9
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.0e-82 310.5 299 57.2
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 2.9e-81 306.6 408 49.8
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 5.7e-77 292.4 430 48.1
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.4e-75 287.0 301 53.5
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 5.0e-65 252.7 216 63.0
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 5.7e-61 239.2 333 43.8
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 9.1e-59 231.9 320 41.6
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 8.8e-54 215.3 208 56.7
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.1e-47 194.1 302 43.0
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.7e-46 189.1 135 74.1
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 6.5e-41 172.6 245 51.8
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 6.1e-39 166.0 110 77.3
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.4e-38 164.9 116 70.7
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.0e-38 163.3 157 56.7
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 7.5e-37 159.1 173 52.6
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 8.3e-36 155.6 246 39.8
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 2.4e-35 154.1 153 54.2
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.1e-35 153.7 372 32.0
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 1.1e-32 145.2 334 31.1
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.5e-32 142.9 241 46.9
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 2.3e-30 137.5 208 48.6
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.0e-25 122.1 98 63.3
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.2e-21 108.6 75 72.0
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 3.4e-21 107.1 157 42.0
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.7e-20 103.6 73 75.3
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.8e-19 101.3 80 65.0
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 3.2e-19 100.5 165 39.4
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 4.1e-19 100.1 57 86.0
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 2.7e-18 97.4 85 58.8
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.6e-18 96.7 133 48.1
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.9e-16 91.3 176 35.2
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 5.6e-16 89.7 131 45.8
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-15 88.6 61 68.9
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 3.1e-14 84.0 317 27.4
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 5.2e-14 83.2 51 84.3
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 5.8e-13 79.7 60 71.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 9.8e-13 79.0 54 75.9
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-12 78.6 57 70.2
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.4e-11 75.1 87 51.7
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 3.2e-11 73.9 101 46.5
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.2e-11 73.9 54 70.4
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 1.3e-09 68.6 108 45.4
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 2.8e-07 60.8 104 31.7
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.8e-06 58.2 417 23.7
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 2.3e-06 57.8 58 55.2
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 8.9e-06 55.8 33 81.8


User provided reference genes

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