Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 2.2e-111 405.6 203 100.0
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 5.2e-100 367.9 196 95.4
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 1.8e-97 359.4 196 93.9
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 2.2e-90 335.9 205 84.9
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 3.7e-90 335.1 205 85.4
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 1.4e-84 316.6 205 81.5
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 2.0e-67 259.6 197 64.5
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 1.3e-66 256.9 200 64.5
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 6.4e-66 254.6 170 70.0
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 8.4e-66 254.2 179 68.2
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 2.4e-65 252.7 202 63.9
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 4.1e-65 251.9 176 67.6
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 7.1e-65 251.1 199 62.8
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 1.6e-64 250.0 196 63.8
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 2.1e-64 249.6 192 63.0
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 4.6e-64 248.4 200 63.5
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 6.0e-64 248.1 197 64.0
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 6.0e-64 248.1 206 63.1
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 1.3e-63 246.9 200 63.0
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 3.9e-63 245.4 186 64.5
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 6.6e-63 244.6 192 65.6
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 8.6e-63 244.2 198 61.1
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 8.6e-63 244.2 169 67.5
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 1.5e-62 243.4 184 64.7
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 2.5e-62 242.7 196 61.2
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 3.3e-62 242.3 181 64.6
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 7.3e-62 241.1 205 62.4
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 7.3e-62 241.1 201 60.2
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 9.6e-62 240.7 177 64.4
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 1.2e-61 240.4 175 64.6
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 1.2e-61 240.4 186 62.9
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 2.1e-61 239.6 183 62.8
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 2.1e-61 239.6 177 63.8
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 2.1e-61 239.6 182 65.9
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 2.8e-61 239.2 183 65.0
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 4.7e-61 238.4 197 62.9
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 6.2e-61 238.0 179 63.7
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 8.1e-61 237.7 177 66.7
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 1.4e-60 236.9 200 60.5
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 2.4e-60 236.1 182 62.6
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 1.5e-59 233.4 173 63.6
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 1.5e-59 233.4 194 61.9
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 2.0e-59 233.0 168 64.3
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 7.6e-59 231.1 203 60.6
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 7.6e-59 231.1 198 59.6
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 9.9e-59 230.7 218 56.0
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 1.3e-58 230.3 191 62.3
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 1.3e-58 230.3 173 63.0
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 1.7e-58 229.9 184 63.6
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.7e-58 229.9 206 59.2
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 2.2e-58 229.6 195 57.9
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 2.2e-58 229.6 205 56.6
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 2.9e-58 229.2 196 61.2
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 2.9e-58 229.2 176 64.8
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 2.9e-58 229.2 168 64.3
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 3.8e-58 228.8 197 58.4
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 3.8e-58 228.8 199 60.8
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 6.4e-58 228.0 196 60.7
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 8.4e-58 227.6 170 63.5
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 8.4e-58 227.6 163 66.3
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 8.4e-58 227.6 188 59.6
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 1.1e-57 227.3 185 61.1
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.9e-57 226.5 206 57.3
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 3.2e-57 225.7 167 67.1
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 3.2e-57 225.7 187 62.6
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 7.1e-57 224.6 179 59.8
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 7.1e-57 224.6 171 63.2
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 7.1e-57 224.6 163 66.3
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 1.6e-56 223.4 186 61.3
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 2.7e-56 222.6 184 60.9
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 6.0e-56 221.5 191 59.7
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 7.8e-56 221.1 202 56.9
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.0e-55 220.7 174 63.2
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 2.3e-55 219.5 201 55.7
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 6.6e-55 218.0 137 70.8
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 1.5e-54 216.9 223 54.3
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 2.5e-54 216.1 178 57.3
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 4.3e-54 215.3 169 62.7
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 4.3e-54 215.3 169 62.7
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 4.3e-54 215.3 169 62.7
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 5.6e-54 214.9 163 60.7
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 9.6e-54 214.2 217 54.4
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 3.6e-53 212.2 185 58.9
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 6.2e-53 211.5 162 64.8
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 6.2e-53 211.5 179 59.2
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 1.4e-52 210.3 169 60.9
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 2.4e-52 209.5 169 60.9
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 5.3e-52 208.4 170 61.8
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 1.2e-51 207.2 165 61.8
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 1.5e-51 206.8 175 59.4
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 1.5e-51 206.8 168 61.9
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 2.6e-51 206.1 179 60.3
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 9.9e-51 204.1 169 60.9
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 3.8e-50 202.2 194 54.1
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 8.4e-50 201.1 202 50.5
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 2.4e-49 199.5 179 54.7
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 9.3e-49 197.6 179 55.3
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 9.3e-49 197.6 194 53.6
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 4.6e-48 195.3 202 49.5
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 5.1e-47 191.8 207 52.2
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 2.5e-46 189.5 182 53.3
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 2.5e-46 189.5 167 56.3
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 1.1e-38 164.1 115 73.0
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 3.1e-36 156.0 212 42.9
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 6.9e-36 154.8 168 50.0
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 4.9e-34 148.7 191 43.5
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 5.5e-33 145.2 183 41.0
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 5.5e-33 145.2 170 42.9
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 2.7e-32 142.9 227 40.1
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 1.9e-30 136.7 223 36.3
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 3.7e-29 132.5 91 69.2
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 2.0e-27 126.7 77 77.9
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 4.5e-27 125.6 103 64.1
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 1.0e-23 114.4 102 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 9.7e-22 107.8 189 34.9
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 2.9e-18 96.3 174 30.5
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 2.5e-17 93.2 222 29.7
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 2.1e-16 90.1 137 38.0
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 1.7e-13 80.5 177 27.1
Peaxi162Scf00405g00081 Petunia axillaris HOM05D006662 ORTHO05D008378 2.6e-11 73.2 72 54.2
Pp3c5_28350 Physcomitrium patens HOM05D006662 ORTHO05D008378 7.7e-11 71.6 216 29.6
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 1.4e-09 67.4 104 37.5
Sabra04G0096800 Salix brachista HOM05D000546 ORTHO05D000398 1.5e-06 57.4 44 56.8


User provided reference genes

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