Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 8.6e-204 713.4 347 100.0
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.7e-197 691.8 347 96.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 6.0e-197 690.6 347 97.1
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 9.9e-184 646.7 348 90.5
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 3.9e-164 581.6 347 83.3
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 7.9e-157 557.4 348 75.9
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 4.8e-154 548.1 346 77.2
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 5.3e-153 544.7 346 76.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.2e-151 539.3 359 74.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.5e-150 535.8 350 73.7
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.2e-150 535.0 346 75.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.2e-150 535.0 342 75.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.6e-149 533.1 346 74.9
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.3e-147 525.4 353 72.8
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.3e-147 525.4 353 72.8
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.3e-146 521.2 349 71.3
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.2e-146 520.8 373 69.2
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 9.0e-145 517.3 349 73.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.4e-144 515.4 358 70.4
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 7.7e-144 514.2 349 72.5
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-143 513.5 363 73.6
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 5.5e-142 508.1 365 70.7
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 5.5e-142 508.1 348 71.8
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.5e-142 508.1 311 82.6
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.4e-142 507.3 351 72.4
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 9.4e-142 507.3 356 69.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-141 506.9 346 69.7
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.2e-141 506.9 350 71.4
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.7e-141 505.8 356 69.1
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.7e-141 505.8 349 72.2
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 3.6e-141 505.4 350 70.6
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 7.9e-141 504.2 375 67.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 2.3e-140 502.7 349 70.5
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.0e-140 502.3 366 67.8
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 3.9e-140 501.9 359 68.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 6.7e-140 501.1 357 70.3
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.1e-139 500.4 358 68.2
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.1e-139 500.4 347 69.7
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.5e-139 500.0 347 69.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.0e-139 499.6 349 70.5
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 3.3e-139 498.8 351 70.7
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 3.3e-139 498.8 351 70.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 7.4e-139 497.7 364 68.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.7e-138 496.5 348 71.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.2e-138 496.1 346 69.1
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.8e-138 495.7 351 70.1
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.8e-138 495.7 354 70.3
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.3e-138 494.6 373 66.5
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 8.2e-138 494.2 348 69.8
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.1e-137 493.8 348 71.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.4e-137 492.7 346 70.8
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 4.1e-137 491.9 345 70.4
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 4.1e-137 491.9 326 72.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.1e-137 491.9 346 70.8
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 5.3e-137 491.5 363 67.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 6.9e-137 491.1 347 70.0
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 6.9e-137 491.1 365 67.7
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.2e-136 490.3 365 67.4
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.0e-136 489.6 357 67.8
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 5.9e-136 488.0 520 52.1
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.0e-135 487.3 364 66.5
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.0e-135 487.3 375 66.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.2e-135 486.1 374 65.2
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.2e-135 486.1 355 68.7
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.9e-135 485.7 344 72.1
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.1e-134 483.8 356 67.7
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.1e-134 483.8 357 66.4
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-134 483.4 357 66.4
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 5.5e-134 481.5 362 66.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.6e-133 478.8 357 66.1
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.9e-133 477.6 355 65.4
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 7.9e-133 477.6 356 68.3
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-132 476.1 356 65.2
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.9e-132 475.3 360 63.9
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 5.1e-132 474.9 362 66.0
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.7e-132 474.6 358 65.6
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 8.8e-132 474.2 352 67.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.0e-131 473.0 371 65.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 4.4e-131 471.9 346 65.6
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.7e-130 469.9 363 64.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.1e-129 467.2 349 67.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.4e-129 466.1 346 67.6
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.1e-129 465.7 330 67.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.5e-128 462.2 348 66.1
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.5e-128 462.2 412 59.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 5.9e-128 461.5 346 66.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.5e-127 458.0 341 66.3
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.7e-125 452.6 341 65.7
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.7e-125 451.8 353 65.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 6.7e-124 448.0 368 63.0
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 6.7e-124 448.0 353 63.7
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.5e-123 446.8 350 64.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 3.3e-123 445.7 353 64.0
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 7.4e-123 444.5 353 64.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 7.4e-123 444.5 346 63.9
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.2e-122 443.0 347 65.1
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.7e-122 442.2 353 64.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.7e-122 442.2 378 58.7
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.4e-121 439.5 374 62.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.1e-121 439.1 361 62.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.1e-121 438.7 346 64.2
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-120 437.2 348 65.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 2.0e-120 436.4 346 63.3
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 2.0e-120 436.4 346 63.3
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 2.6e-120 436.0 353 63.2
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 4.5e-120 435.3 353 63.5
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.9e-120 434.9 366 58.5
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.0e-119 434.1 357 63.6
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-119 433.7 353 63.5
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 5.0e-119 431.8 353 63.2
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-118 430.6 315 67.6
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 1.5e-118 430.3 353 62.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 3.2e-118 429.1 344 64.0
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 5.5e-118 428.3 356 61.0
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.6e-117 425.6 344 62.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 2.3e-116 422.9 345 63.2
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 4.0e-116 422.2 345 62.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.0e-115 419.9 347 62.2
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.0e-115 419.9 375 60.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.1e-113 412.1 432 53.2
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 7.0e-113 411.4 342 62.6
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.2e-112 410.6 338 62.4
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.7e-112 409.5 346 59.2
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.5e-112 409.1 345 59.4
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.2e-111 406.4 353 60.3
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.8e-111 405.6 414 53.9
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.1e-110 404.1 362 57.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 4.2e-110 402.1 329 65.3
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-108 397.1 346 60.1
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.1e-105 387.5 330 61.8
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.5e-104 382.5 324 59.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 7.2e-102 374.8 362 54.1
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.8e-92 341.7 351 51.6
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.1e-85 320.1 340 50.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.7e-82 310.5 242 63.2
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.2e-81 306.2 377 47.5
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 3.0e-79 299.7 372 45.4
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.6e-77 292.7 300 55.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.0e-71 274.6 379 42.2
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 7.3e-70 268.5 363 43.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 4.7e-69 265.8 181 75.7
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 3.4e-67 259.6 165 72.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 5.8e-67 258.8 240 53.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 7.6e-67 258.5 343 42.0
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.9e-65 253.8 232 62.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-63 248.1 217 62.7
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.1e-63 245.7 237 55.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.1e-63 245.7 237 55.3
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.3e-62 242.7 215 60.5
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.2e-58 230.3 390 36.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 2.9e-58 229.9 193 62.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.7e-50 204.1 134 76.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 5.5e-41 172.6 130 60.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 7.6e-35 152.1 102 70.6
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.6e-32 144.4 376 30.6
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.8e-29 132.9 350 30.9
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.4e-28 131.3 115 55.7
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-23 114.8 72 68.1
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 9.4e-17 92.0 81 60.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.7e-16 89.7 63 68.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.1e-06 58.5 33 66.7


User provided reference genes

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