Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 3.3e-53 211.5 107 100.0
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.9e-49 198.4 108 93.5
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 5.1e-46 187.6 107 89.7
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.5e-37 159.5 107 77.6
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 3.5e-31 138.3 107 70.1
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 8.7e-30 133.7 105 70.5
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 7.3e-29 130.6 94 73.4
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 9.6e-29 130.2 108 68.5
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 8.1e-28 127.1 106 67.0
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 8.4e-25 117.1 71 81.7
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.2e-15 86.7 91 58.2
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.6e-15 86.3 92 60.9
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 7.4e-13 77.4 54 75.9
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.3e-12 76.6 111 43.2
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 6.2e-12 74.3 103 45.6
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.8e-11 72.8 53 67.9
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 3.1e-11 72.0 55 69.1
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 6.9e-11 70.9 108 44.4
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 9.0e-11 70.5 57 68.4
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 5.8e-10 67.8 57 61.4
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.0e-09 67.0 98 44.9
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 1.0e-09 67.0 110 40.0
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 1.3e-09 66.6 84 47.6
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.3e-09 66.6 93 46.2
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.3e-09 66.6 110 41.8
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.3e-09 66.6 115 40.0
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 2.2e-09 65.9 46 67.4
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 2.2e-09 65.9 59 55.9
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 2.2e-09 65.9 101 41.6
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 4.9e-09 64.7 51 64.7
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.5e-09 64.3 93 45.2
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 6.5e-09 64.3 93 45.2
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 8.4e-09 63.9 57 59.6
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 8.4e-09 63.9 73 50.7
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 1.1e-08 63.5 50 72.0
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.1e-08 63.5 92 50.0
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.1e-08 63.5 57 59.6
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.1e-08 63.5 84 48.8
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.4e-08 63.2 57 57.9
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-08 62.8 93 45.2
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 2.5e-08 62.4 62 51.6
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 4.2e-08 61.6 64 62.5
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 5.5e-08 61.2 95 42.1
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 5.5e-08 61.2 75 49.3
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 9.3e-08 60.5 48 64.6
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 9.3e-08 60.5 107 43.9
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 9.3e-08 60.5 77 50.6
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 1.2e-07 60.1 111 38.7
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.2e-07 60.1 77 50.6
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.2e-07 60.1 109 38.5
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 2.1e-07 59.3 53 62.3
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 2.7e-07 58.9 109 45.9
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 3.5e-07 58.5 93 40.9
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 3.5e-07 58.5 93 40.9
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 3.5e-07 58.5 99 44.4
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 4.6e-07 58.2 80 48.8
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.9e-07 57.4 78 51.3
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 7.9e-07 57.4 84 45.2
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 1.3e-06 56.6 113 38.9
ECA240G1449 Erigeron canadensis HOM05D007107 ORTHO05D009198 1.8e-06 56.2 49 61.2
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 3.9e-06 55.1 71 50.7


User provided reference genes

Program Settings