Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025830 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.4e-172 609.0 365 100.0
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.5e-78 297.4 264 77.7
Sopen01g051160 Solanum pennellii HOM05D008110 ORTHO05D000088 1.9e-76 290.4 264 78.0
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 8.8e-58 228.4 264 53.0
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.6e-57 226.9 264 51.9
CAN.G322.83 Capsicum annuum HOM05D008110 ORTHO05D000088 5.4e-55 219.2 150 68.0
PGSC0003DMG401025831 Solanum tuberosum HOM05D008110 ORTHO05D000088 7.0e-55 218.8 147 70.7
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 5.9e-54 215.7 154 63.6
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 6.1e-51 205.7 131 70.2
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 4.0e-50 203.0 251 65.3
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.6e-49 200.3 249 63.1
CAN.G192.15 Capsicum annuum HOM05D008110 ORTHO05D000088 5.7e-49 199.1 145 62.1
Solyc01g109030.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 9.8e-49 198.4 137 66.4
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.3e-48 198.0 144 64.6
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.3e-48 198.0 133 68.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.9e-48 196.1 125 72.0
Solyc01g108940.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.4e-47 193.7 230 71.3
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 1.1e-44 184.9 154 57.8
Sopen02g006830 Solanum pennellii HOM05D008110 ORTHO05D000088 1.2e-43 181.4 231 49.4
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 5.2e-42 176.0 129 62.8
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.9e-38 162.5 264 48.1
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 2.5e-36 157.1 122 57.4
PGSC0003DMG400025928 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.2e-34 149.4 82 90.2
Sopen01g051140 Solanum pennellii HOM05D008110 ORTHO05D000088 4.4e-33 146.4 213 67.6
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 3.9e-29 133.3 124 47.6
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 1.5e-28 131.3 130 45.4
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 4.3e-28 129.8 113 47.8
Sopen06g015150 Solanum pennellii HOM05D008110 ORTHO05D000088 4.3e-28 129.8 242 60.7
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.2e-27 128.3 115 47.8
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 3.6e-27 126.7 139 46.8
CSS0024769 Camellia sinensis var. sinensis HOM05D008110 ORTHO05D000088 1.8e-26 124.4 140 40.7
Migut.N02603 Erythranthe guttata HOM05D008110 ORTHO05D000088 5.2e-26 122.9 109 50.5
Hma1.2p1_1527F.1_g289060 Hydrangea macrophylla HOM05D008110 ORTHO05D000088 8.9e-26 122.1 113 44.2
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 8.9e-26 122.1 113 46.0
PGSC0003DMG400044605 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.5e-25 121.3 204 52.0
CAN.G322.80 Capsicum annuum HOM05D000823 ORTHO05D000088 2.6e-25 120.6 81 74.1
PGSC0003DMG400037529 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.9e-24 117.1 86 61.6
PGSC0003DMG400035405 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.7e-24 116.7 235 40.4
Sopen01g051190 Solanum pennellii HOM05D008110 ORTHO05D000088 4.9e-24 116.3 95 66.3
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 7.1e-23 112.5 123 43.9
Sopen01g051220 Solanum pennellii HOM05D008110 ORTHO05D000088 1.2e-22 111.7 75 65.3
CAN.G504.44 Capsicum annuum HOM05D000185 ORTHO05D000105 2.1e-22 110.9 82 63.4
PGSC0003DMG400044725 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.5e-22 110.2 99 54.5
Nitab4.5_0001401g0170 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.7e-21 107.8 83 66.3
Sopen01g051130 Solanum pennellii HOM05D000823 ORTHO05D000088 6.6e-21 105.9 80 76.2
SalBow7G1050 Salvia bowleyana HOM05D008110 ORTHO05D000088 8.6e-21 105.5 106 43.4
MSTRG.17812 Avicennia marina HOM05D008110 ORTHO05D000088 1.5e-20 104.8 105 42.9
SGA_v2.0_scaffold54G19507 Striga asiatica HOM05D008110 ORTHO05D000088 1.5e-20 104.8 130 40.8
Solyc01g108930.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 2.5e-20 104.0 91 69.2
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 3.3e-20 103.6 128 39.1
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 5.6e-20 102.8 232 31.5
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 5.6e-20 102.8 99 46.5
CAN.G192.14 Capsicum annuum HOM05D008110 ORTHO05D000088 7.3e-20 102.4 83 59.0
Rhsim02G0167400 Rhododendron simsii HOM05D008110 ORTHO05D000088 1.2e-19 101.7 93 45.2
SGA_v2.0_scaffold223G42874 Striga asiatica HOM05D008110 ORTHO05D000088 1.5e-17 94.7 119 37.8
Oeu003285.1 Olea europaea HOM05D008110 ORTHO05D000088 9.9e-17 92.0 99 42.4
SGA_v2.0_scaffold54G19506 Striga asiatica HOM05D008110 ORTHO05D000088 5.4e-15 86.3 155 30.3
Duzib248G0315 Durio zibethinus HOM05D008110 ORTHO05D000088 2.7e-14 84.0 103 44.7
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 1.0e-13 82.0 136 34.6
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 3.9e-13 80.1 104 39.4
Sopen01g051230 Solanum pennellii HOM05D008110 ORTHO05D000088 3.9e-13 80.1 54 66.7
Eucgr.A01956 Eucalyptus grandis HOM05D008110 ORTHO05D000088 1.1e-12 78.6 104 38.5
Nitab4.5_0008194g0030 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.5e-12 78.2 84 53.6
Peaxi162Scf00016g01343 Petunia axillaris HOM05D000823 ORTHO05D000088 5.6e-12 76.3 80 53.8
EL10Ac9g21796 Beta vulgaris HOM05D000823 ORTHO05D000088 1.2e-11 75.1 83 36.1
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.6e-11 74.7 95 31.6
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 6.8e-10 69.3 95 33.7
Sopen05g025010 Solanum pennellii HOM05D008110 ORTHO05D000088 8.9e-10 68.9 196 43.9
Atru.chr2.2906 Acer truncatum HOM05D000823 ORTHO05D000088 1.5e-09 68.2 100 36.0
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 2.0e-09 67.8 106 34.9
CiPaw.01G027400 Carya illinoinensis HOM05D000823 ORTHO05D000088 2.0e-09 67.8 103 35.0
Thecc.02G027900 Theobroma cacao HOM05D008110 ORTHO05D000088 2.0e-09 67.8 126 34.9
COL.COLO4_32520 Corchorus olitorius HOM05D008110 ORTHO05D000088 2.6e-09 67.4 112 38.4
Solyc01g108990.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.6e-09 67.4 44 75.0
Solyc01g109000.1 Solanum lycopersicum HOM05D052034 ORTHO05D051120 5.8e-09 66.2 39 87.2
Haze_08008 Corylus avellana HOM05D000823 ORTHO05D000088 1.7e-08 64.7 133 30.8
Sopen01g051200 Solanum pennellii HOM05D052034 ORTHO05D051120 1.7e-08 64.7 38 86.8
Ah.01g019890 Amaranthus hybridus HOM05D001349 ORTHO05D001980 3.8e-08 63.5 82 36.6
Phvul.008G220000 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 3.8e-08 63.5 162 27.2
Hund06201 Selenicereus undatus HOM05D000823 ORTHO05D000088 8.4e-08 62.4 70 38.6
AUR62011404 Chenopodium quinoa HOM05D000823 ORTHO05D000088 1.1e-07 62.0 103 29.1
Medtr1g046200 Medicago truncatula HOM05D010195 ORTHO05D000088 1.1e-07 62.0 170 24.1
Oeu003288.1 Olea europaea HOM05D008110 ORTHO05D000088 4.2e-07 60.1 49 44.9
AUR62016654 Chenopodium quinoa HOM05D006628 ORTHO05D000088 1.2e-06 58.5 103 28.2
Glyma.14G055700 Glycine max HOM05D010195 ORTHO05D000088 2.1e-06 57.8 123 28.5
Psat6g109080 Pisum sativum HOM05D010195 ORTHO05D000088 2.7e-06 57.4 122 27.9
Aa31LG1G12320 Aethionema arabicum HOM05D009243 ORTHO05D011355 3.5e-06 57.0 100 33.0
Medtr1g046320 Medicago truncatula HOM05D010195 ORTHO05D000088 6.0e-06 56.2 158 24.7
AL8G36740 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 7.8e-06 55.8 97 28.9


User provided reference genes

Program Settings