Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 6.5e-134 480.7 240 100.0
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 8.2e-113 410.6 227 91.6
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 2.7e-95 352.4 216 84.3
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 2.3e-83 312.8 158 97.5
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 2.2e-81 306.2 158 93.7
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 2.7e-79 299.3 158 91.8
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.0e-78 295.8 154 92.2
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 9.8e-74 280.8 166 80.1
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 1.6e-71 273.5 226 62.8
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.3e-70 270.4 212 62.7
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.3e-70 270.4 193 67.4
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 1.3e-70 270.4 193 67.4
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.3e-70 269.6 212 62.7
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 4.3e-69 265.4 209 65.1
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.3e-69 265.4 201 66.7
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.3e-69 265.4 201 66.2
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 4.3e-69 265.4 156 79.5
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 5.6e-69 265.0 225 60.9
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 5.6e-69 265.0 170 72.9
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 5.6e-69 265.0 160 78.8
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 7.3e-69 264.6 218 61.0
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 9.5e-69 264.2 214 61.7
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 9.5e-69 264.2 158 76.6
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 1.2e-68 263.8 158 77.2
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 1.2e-68 263.8 158 77.8
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 3.6e-68 262.3 217 60.4
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 4.7e-68 261.9 198 66.2
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 6.2e-68 261.5 160 75.6
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 6.2e-68 261.5 160 75.6
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.1e-67 260.8 214 60.7
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 1.1e-67 260.8 160 75.0
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.1e-67 260.8 192 65.6
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 1.4e-67 260.4 221 58.8
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.4e-67 260.4 211 61.6
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.8e-67 260.0 197 64.0
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.8e-67 260.0 219 59.8
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.8e-67 260.0 200 65.0
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 1.8e-67 260.0 219 59.8
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 2.3e-67 259.6 220 61.4
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 2.3e-67 259.6 178 69.1
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 3.1e-67 259.2 213 63.8
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 3.1e-67 259.2 219 59.4
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 3.1e-67 259.2 187 67.4
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 4.0e-67 258.8 196 65.8
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 5.2e-67 258.5 217 61.8
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 6.8e-67 258.1 231 57.1
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 8.9e-67 257.7 158 73.4
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 1.5e-66 256.9 210 64.3
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 2.0e-66 256.5 195 65.1
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 2.6e-66 256.1 213 62.9
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 2.6e-66 256.1 219 58.0
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 4.4e-66 255.4 193 64.8
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 4.4e-66 255.4 160 73.8
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 5.8e-66 255.0 202 65.3
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 7.6e-66 254.6 207 61.8
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 7.6e-66 254.6 158 74.1
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 9.9e-66 254.2 220 59.5
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 2.2e-65 253.1 194 64.4
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 2.9e-65 252.7 219 58.9
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 6.4e-65 251.5 189 66.7
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 6.4e-65 251.5 162 72.8
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 8.4e-65 251.1 213 62.4
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 1.1e-64 250.8 183 63.9
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 1.4e-64 250.4 185 65.4
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.4e-64 249.6 158 70.9
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.4e-64 249.6 210 58.6
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 4.1e-64 248.8 211 59.7
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 4.1e-64 248.8 199 63.3
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 4.1e-64 248.8 199 63.3
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 9.2e-64 247.7 157 73.2
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.2e-63 247.3 158 70.9
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 2.1e-63 246.5 185 64.3
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 2.7e-63 246.1 229 55.9
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 3.0e-62 242.7 194 60.8
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 8.6e-62 241.1 165 66.1
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 1.5e-61 240.4 180 64.4
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.9e-61 240.0 206 58.7
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 3.3e-61 239.2 208 58.2
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 3.6e-60 235.7 191 60.7
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 9.9e-58 227.6 158 68.4
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 1.1e-56 224.2 183 57.9
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 1.1e-56 224.2 183 57.9
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 1.4e-56 223.8 171 58.5
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 2.4e-56 223.0 207 53.6
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 2.4e-56 223.0 157 62.4
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 4.2e-56 222.2 183 57.4
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 9.3e-56 221.1 157 62.4
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 9.3e-56 221.1 157 62.4
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 3.5e-55 219.2 158 60.8
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 6.0e-55 218.4 162 63.0
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 1.0e-54 217.6 183 57.4
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 1.3e-54 217.2 189 60.3
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 5.1e-54 215.3 190 53.7
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 1.5e-53 213.8 169 58.6
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 1.5e-53 213.8 170 58.8
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 2.5e-53 213.0 134 70.9
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.4e-51 207.2 161 59.6
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 9.3e-48 194.5 169 53.3
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.8e-46 190.3 112 82.1
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 5.1e-46 188.7 145 58.6
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 9.6e-45 184.5 120 70.8
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 1.2e-42 177.6 182 56.0
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 3.4e-42 176.0 142 64.1
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 1.7e-41 173.7 164 50.6
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 2.2e-41 173.3 122 70.5
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 1.1e-40 171.0 154 53.9
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 1.1e-40 171.0 157 59.2
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 1.4e-40 170.6 111 74.8
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 2.5e-37 159.8 166 47.0
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.4e-35 153.3 111 65.8
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 1.9e-32 143.7 91 70.3
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 4.6e-31 139.0 122 54.9
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 1.5e-26 124.0 121 49.6
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 2.1e-23 113.6 161 39.1
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 3.6e-23 112.8 217 30.9
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 3.7e-20 102.8 173 35.8
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.4e-14 84.3 51 70.6
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 1.8e-14 84.0 48 72.9
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.0e-14 83.2 52 67.3
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.0e-14 83.2 55 67.3
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 3.0e-14 83.2 55 67.3
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 6.9e-11 72.0 46 67.4
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.7e-07 60.1 38 73.7
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 6.1e-07 58.9 81 45.7


User provided reference genes

Program Settings