Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025634 Solanum tuberosum HOM05D008697 ORTHO05D010866 1.9e-232 808.9 413 100.0
PGSC0003DMG400015282 Solanum tuberosum HOM05D008697 ORTHO05D010866 4.3e-173 611.7 388 77.6
Sopen03g029650 Solanum pennellii HOM05D008697 ORTHO05D010866 7.4e-157 557.8 375 73.1
PGSC0003DMG400015218 Solanum tuberosum HOM05D008697 ORTHO05D010923 1.6e-135 486.9 395 64.3
Sopen03g029630 Solanum pennellii HOM05D008697 ORTHO05D010923 2.3e-118 429.9 385 59.0
PGSC0003DMG400015217 Solanum tuberosum HOM05D008697 ORTHO05D010866 7.0e-115 418.3 374 58.8
Sopen03g029100 Solanum pennellii HOM05D008697 ORTHO05D010866 1.6e-114 417.2 388 56.4
CAN.G1631.3 Capsicum annuum HOM05D008697 ORTHO05D010866 1.3e-105 387.5 374 54.5
CAN.G1909.14 Capsicum annuum HOM05D008697 ORTHO05D010866 5.2e-102 375.6 375 52.5
CAN.G1631.2 Capsicum annuum HOM05D008697 ORTHO05D010866 6.8e-102 375.2 376 54.0
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 1.2e-98 364.4 376 52.1
PGSC0003DMG400025633 Solanum tuberosum HOM05D008697 ORTHO05D010866 8.7e-97 358.2 338 57.4
PGSC0003DMG400025631 Solanum tuberosum HOM05D008697 ORTHO05D010866 2.6e-93 346.7 283 60.8
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 2.5e-75 287.0 382 45.0
Nitab4.5_0000430g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.3e-65 254.6 395 41.3
Nitab4.5_0003309g0040 Nicotiana tabacum HOM05D008697 ORTHO05D010866 6.3e-63 245.7 391 40.2
Peaxi162Scf00171g00721 Petunia axillaris HOM05D008697 ORTHO05D010866 1.4e-57 228.0 379 40.9
Sopen09g026680 Solanum pennellii HOM05D008697 ORTHO05D010866 4.3e-56 223.0 194 57.7
Peaxi162Scf00171g00630 Petunia axillaris HOM05D008697 ORTHO05D010866 1.7e-55 221.1 395 38.7
Sopen09g026700 Solanum pennellii HOM05D008697 ORTHO05D010866 4.2e-51 206.5 184 57.1
CAN.G637.31 Capsicum annuum HOM05D008697 ORTHO05D010866 1.8e-49 201.1 385 37.1
Peaxi162Scf00251g00041 Petunia axillaris HOM05D008697 ORTHO05D010866 2.3e-49 200.7 388 36.6
Peaxi162Scf00001g00056 Petunia axillaris HOM05D008697 ORTHO05D010866 3.0e-49 200.3 388 37.1
Peaxi162Scf00171g00817 Petunia axillaris HOM05D008697 ORTHO05D010866 8.2e-47 192.2 401 34.9
CAN.G1631.1 Capsicum annuum HOM05D000021 ORTHO05D000010 4.7e-42 176.4 187 49.2
CAN.G637.32 Capsicum annuum HOM05D008697 ORTHO05D010866 1.3e-39 168.3 413 33.4
PGSC0003DMG400017884 Solanum tuberosum HOM05D008697 ORTHO05D010866 2.0e-37 161.0 382 31.9
Nitab4.5_0004454g0050 Nicotiana tabacum HOM05D008697 ORTHO05D010866 3.6e-34 150.2 286 37.8
Nitab4.5_0003309g0020 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.2e-32 145.2 187 43.3
Nitab4.5_0005200g0090 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.2e-24 118.6 139 46.0
Nitab4.5_0001180g0260 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.3e-23 115.2 192 39.1
Peaxi162Scf00115g00112 Petunia axillaris HOM05D008697 ORTHO05D010866 1.7e-23 114.8 267 32.2
Peaxi162Scf00171g00931 Petunia axillaris HOM05D008697 ORTHO05D010866 1.2e-21 108.6 308 27.6
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 1.6e-21 108.2 357 27.5
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 8.6e-20 102.4 359 27.3
Actinidia11171 Actinidia chinensis HOM05D008697 ORTHO05D010866 1.2e-18 98.6 369 26.0
Nitab4.5_0000430g0090 Nicotiana tabacum HOM05D008697 ORTHO05D010866 2.8e-18 97.4 155 41.3
QL03p004281 Quercus lobata HOM05D008697 ORTHO05D010866 6.8e-17 92.8 377 25.2
Nitab4.5_0003309g0030 Nicotiana tabacum HOM05D008697 ORTHO05D010866 1.2e-16 92.0 153 40.5
Oeu008441.1 Olea europaea HOM05D008697 ORTHO05D010866 1.8e-14 84.7 210 31.4
Peaxi162Scf48310g00001 Petunia axillaris HOM05D008697 ORTHO05D010866 1.8e-14 84.7 86 47.7
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 2.4e-14 84.3 333 25.5
Nitab4.5_0004148g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 3.2e-14 84.0 168 33.9
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 9.2e-14 82.4 333 25.2
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.7e-13 80.9 158 34.2
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 5.9e-13 79.7 333 24.6
Potri.005G254500 Populus trichocarpa HOM05D000664 ORTHO05D010866 7.8e-13 79.3 291 27.5
Potri.005G254633 Populus trichocarpa HOM05D000664 ORTHO05D010866 1.3e-12 78.6 293 28.7
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 1.7e-12 78.2 303 25.4
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.9e-12 77.0 299 27.1
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.6e-12 76.3 307 23.1
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.6e-12 75.9 291 25.8
Migut.N02976 Erythranthe guttata HOM05D008697 ORTHO05D010866 1.5e-11 75.1 304 27.6
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 7.3e-11 72.8 333 25.5
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 7.3e-11 72.8 333 25.5
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 7.3e-11 72.8 333 25.5
CSS0016805 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000676 9.5e-11 72.4 232 25.0
Rhsim01G0018000 Rhododendron simsii HOM05D000664 ORTHO05D000491 9.5e-11 72.4 279 28.0
THA.LOC104801597 Tarenaya hassleriana HOM05D000664 ORTHO05D000491 9.5e-11 72.4 241 24.9
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.1e-10 71.2 334 24.6
Rhsim01G0016900 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.6e-10 70.5 276 27.2
Nitab4.5_0000936g0070 Nicotiana tabacum HOM05D008697 ORTHO05D010866 4.7e-10 70.1 141 33.3
Nitab4.5_0000413g0120 Nicotiana tabacum HOM05D000664 ORTHO05D000491 8.0e-10 69.3 295 24.4
Hma1.2p1_0726F.1_g208920 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 1.0e-09 68.9 291 25.4
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 1.0e-09 68.9 246 26.0
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 1.4e-09 68.6 163 33.1
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.8e-09 68.2 254 25.2
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 2.3e-09 67.8 227 26.4
TAR626G1986 Trochodendron aralioides HOM05D000664 ORTHO05D000491 2.3e-09 67.8 294 24.1
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.1e-09 67.4 234 26.9
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.1e-09 67.4 242 25.2
PSO421G0629 Papaver somniferum HOM05D000007 ORTHO05D000676 3.1e-09 67.4 254 24.4
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 4.0e-09 67.0 296 24.7
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 4.0e-09 67.0 223 26.0
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.2e-09 66.6 174 29.3
ClCG06G012330 Citrullus lanatus HOM05D000759 ORTHO05D000574 5.2e-09 66.6 297 23.9
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.8e-09 66.2 239 26.4
PGR044G0383 Punica granatum HOM05D000664 ORTHO05D000491 6.8e-09 66.2 233 27.9
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 8.9e-09 65.9 239 25.9
Rhsim11G0068900 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.9e-09 65.9 301 26.2
FAN21G3529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-08 64.7 239 25.9
Nitab4.5_0011101g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.0e-08 64.7 228 26.8
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 3.4e-08 63.9 277 24.5
CAN.G54.4 Capsicum annuum HOM05D000664 ORTHO05D000491 3.4e-08 63.9 147 34.7
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 5.8e-08 63.2 291 21.3
Lj5P697T4 Lonicera japonica HOM05D000664 ORTHO05D000491 5.8e-08 63.2 249 24.9
Peaxi162Scf00320g00071 Petunia axillaris HOM05D000664 ORTHO05D000491 5.8e-08 63.2 230 27.0
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 7.5e-08 62.8 304 22.7
Cc06_g22330 Coffea canephora HOM05D000664 ORTHO05D000491 7.5e-08 62.8 297 24.2
arahy.Tifrunner.gnm1.ann1.6LG1IJ Arachis hypogaea HOM05D002420 ORTHO05D002422 9.8e-08 62.4 232 25.4
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 9.8e-08 62.4 312 25.3
COL.COLO4_29637 Corchorus olitorius HOM05D000664 ORTHO05D000491 9.8e-08 62.4 242 26.4
Nitab4.5_0009785g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 9.8e-08 62.4 190 27.4
Aqoxy5G03305 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.3e-07 62.0 170 28.8
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-07 62.0 335 25.1
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 1.7e-07 61.6 279 23.7
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.7e-07 61.6 224 25.0
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.2e-07 61.2 265 22.6
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 2.9e-07 60.8 238 26.5
PSO832G2113 Papaver somniferum HOM05D000007 ORTHO05D000676 2.9e-07 60.8 250 24.4
Psat5g142640 Pisum sativum HOM05D010448 ORTHO05D012537 2.9e-07 60.8 211 25.6
PSO063G0730 Papaver somniferum HOM05D000664 ORTHO05D000491 3.7e-07 60.5 289 23.5
PSO144G0087 Papaver somniferum HOM05D000664 ORTHO05D000491 3.7e-07 60.5 243 26.3
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 4.9e-07 60.1 312 25.0
Thecc.03G149600 Theobroma cacao HOM05D000664 ORTHO05D000491 6.4e-07 59.7 211 27.0
unitig_899.g14987 Utricularia gibba HOM05D002420 ORTHO05D002422 6.4e-07 59.7 155 29.0
COL.COLO4_19852 Corchorus olitorius HOM05D002420 ORTHO05D002422 8.3e-07 59.3 301 22.6
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 8.3e-07 59.3 275 22.9
Lsat_1_v5_gn_9_51461 Lactuca sativa HOM05D000664 ORTHO05D000491 8.3e-07 59.3 150 30.0
PSO229G0005 Papaver somniferum HOM05D000664 ORTHO05D000491 8.3e-07 59.3 295 24.4
HanXRQChr16g0512521 Helianthus annuus HOM05D005076 ORTHO05D004974 1.1e-06 58.9 313 24.3
Sc07g0006650 Simmondsia chinensis HOM05D000007 ORTHO05D000039 1.1e-06 58.9 245 22.4
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 1.4e-06 58.5 301 25.9
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-06 58.5 269 25.7
RcHm_v2.0_Chr2g0174531 Rosa chinensis HOM05D000664 ORTHO05D000491 1.4e-06 58.5 175 24.6
TPR.G18483 Trifolium pratense HOM05D010448 ORTHO05D012537 1.4e-06 58.5 164 29.3
MD15G1264700 Malus domestica HOM05D002420 ORTHO05D002422 1.9e-06 58.2 164 29.3
QL06p045710 Quercus lobata HOM05D002420 ORTHO05D002422 1.9e-06 58.2 239 25.1
RcHm_v2.0_Chr5g0044501 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-06 58.2 223 27.4
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 3.2e-06 57.4 213 24.9
FAN12G1497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.2e-06 57.4 267 25.8
Potri.017G058900 Populus trichocarpa HOM05D000007 ORTHO05D000017 3.2e-06 57.4 215 28.4
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 4.1e-06 57.0 147 26.5
FvH4_4g30361 Fragaria vesca HOM05D000007 ORTHO05D000017 4.1e-06 57.0 274 25.2
PSO063G0812 Papaver somniferum HOM05D000664 ORTHO05D000491 4.1e-06 57.0 154 27.3
Aqoxy7G01104 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 5.4e-06 56.6 143 30.1
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 5.4e-06 56.6 298 24.5
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 5.4e-06 56.6 190 25.8
PGR083G1858 Punica granatum HOM05D000007 ORTHO05D000017 5.4e-06 56.6 273 26.7
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 7.0e-06 56.2 305 23.6
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 7.0e-06 56.2 169 28.4
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 7.0e-06 56.2 169 28.4
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 7.0e-06 56.2 234 26.1
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 7.0e-06 56.2 332 23.2
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 9.2e-06 55.8 151 28.5
Migut.N00590 Erythranthe guttata HOM05D000007 ORTHO05D000017 9.2e-06 55.8 233 25.3


User provided reference genes

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