Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 8.2e-165 583.6 276 100.0
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 2.0e-163 578.9 276 98.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.9e-161 572.4 276 98.6
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 3.7e-157 558.1 276 95.3
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 9.4e-153 543.5 276 93.1
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.1e-152 542.3 276 92.8
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 2.4e-140 502.3 278 88.5
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 4.4e-134 481.5 256 86.7
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 7.5e-134 480.7 268 82.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.3e-133 479.9 268 82.5
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.2e-133 479.2 270 83.3
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.2e-133 479.2 270 83.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.8e-133 478.8 268 82.5
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.7e-133 478.4 270 82.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.8e-132 476.1 276 80.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 2.0e-131 472.6 276 81.2
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.5e-131 471.5 269 81.4
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.2e-130 469.2 267 80.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.5e-129 466.5 265 81.9
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 3.2e-129 465.3 260 81.9
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.2e-128 463.4 263 82.1
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-128 463.0 269 81.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 6.1e-128 461.1 276 79.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 6.1e-128 461.1 275 78.9
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.8e-127 459.5 263 80.6
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.8e-127 459.5 271 80.1
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.8e-127 459.5 260 81.2
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.0e-127 458.8 270 80.7
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 3.0e-127 458.8 266 79.3
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 8.8e-127 457.2 273 79.5
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 7.5e-126 454.1 262 80.5
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 9.8e-126 453.8 269 78.4
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 9.8e-126 453.8 262 79.4
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.3e-125 453.4 271 79.0
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.7e-125 453.0 270 78.5
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.7e-125 453.0 260 81.9
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.2e-125 452.6 259 81.9
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 2.2e-125 452.6 269 77.3
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 8.3e-125 450.7 263 77.6
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.4e-124 449.9 263 78.3
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.4e-124 449.9 260 78.8
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.8e-124 449.5 268 79.9
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.8e-124 449.5 263 80.2
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.4e-124 449.1 268 77.6
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.4e-124 449.1 269 76.6
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.4e-124 449.1 269 76.6
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 2.4e-124 449.1 260 80.4
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 2.4e-124 449.1 277 76.9
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 4.1e-124 448.4 265 77.0
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 7.0e-124 447.6 254 80.3
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.7e-123 445.7 260 80.4
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 7.7e-123 444.1 277 76.5
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 7.7e-123 444.1 277 76.2
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.3e-122 443.4 260 80.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 5.0e-122 441.4 277 75.8
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 6.5e-122 441.0 250 80.4
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.6e-122 440.7 255 79.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 8.6e-122 440.7 260 76.5
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.2e-120 436.8 293 72.4
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.6e-120 436.4 272 76.1
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.8e-120 435.6 272 76.1
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.8e-120 435.6 255 79.2
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.8e-120 435.6 267 73.4
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.6e-120 435.3 281 75.4
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.7e-120 434.9 281 75.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 8.0e-120 434.1 272 75.7
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 1.0e-119 433.7 267 73.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-119 433.3 281 74.7
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.8e-119 433.0 272 75.4
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.8e-119 433.0 254 78.0
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.8e-119 433.0 276 73.2
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 2.3e-119 432.6 271 75.3
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.3e-119 432.6 281 75.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.0e-119 432.2 258 78.7
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 4.0e-119 431.8 260 75.0
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.5e-118 429.9 272 75.4
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.7e-118 427.9 278 73.4
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.3e-117 426.8 272 74.3
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.3e-117 426.8 263 75.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.7e-117 426.4 262 77.1
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 2.2e-117 426.0 271 74.9
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 2.8e-117 425.6 256 74.6
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 3.7e-117 425.2 260 78.1
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.9e-117 424.9 250 78.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 6.3e-117 424.5 271 74.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.1e-116 423.7 276 72.8
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 3.1e-116 422.2 263 74.5
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.4e-116 421.4 241 81.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 9.2e-116 420.6 269 74.7
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 9.2e-116 420.6 271 74.2
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 9.2e-116 420.6 277 72.9
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.2e-115 420.2 280 72.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.5e-115 418.3 267 73.4
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 7.8e-115 417.5 276 71.4
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.0e-114 417.2 259 74.1
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.3e-114 416.8 258 76.4
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.9e-114 415.6 283 69.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.6e-114 414.5 272 73.2
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.5e-113 413.3 281 70.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.3e-113 411.8 255 74.5
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.2e-112 410.2 274 70.1
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.5e-110 403.3 269 71.7
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 4.4e-110 401.7 301 65.4
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.3e-109 400.2 231 81.0
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.2e-109 399.4 268 70.9
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 6.4e-109 397.9 210 84.8
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.4e-108 396.0 295 66.8
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 2.4e-108 396.0 247 74.9
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 7.8e-107 391.0 280 69.3
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 3.0e-106 389.0 232 73.3
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 2.0e-102 376.3 232 70.7
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 4.4e-102 375.2 224 75.4
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.9e-101 372.5 218 79.4
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.7e-99 365.9 222 77.0
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.3e-98 363.6 228 69.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 2.5e-97 359.4 229 69.9
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.8e-96 355.9 223 68.2
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.0e-95 352.1 221 69.2
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 8.9e-95 350.9 223 68.6
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 8.3e-93 344.4 264 65.2
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.2e-92 340.9 284 60.2
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 2.1e-91 339.7 193 79.3
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.4e-87 327.0 330 53.0
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.9e-85 319.3 233 66.1
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.9e-85 319.3 280 60.0
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.8e-85 318.9 180 81.1
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.2e-84 315.8 165 84.8
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.4e-79 299.7 224 58.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.9e-79 298.1 199 66.3
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 3.0e-74 282.7 163 81.0
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.4e-68 263.8 163 74.8
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.2e-68 262.3 156 76.9
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.1e-63 247.7 139 79.9
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 3.8e-61 239.2 213 58.7
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 6.4e-61 238.4 200 61.5
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.3e-50 203.4 126 76.2
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.1e-50 202.2 121 76.9
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.9e-34 149.4 105 70.5
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.1e-31 141.4 86 79.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 6.7e-26 122.1 72 79.2
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 4.4e-25 119.4 80 68.8
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.7e-24 116.3 69 71.0
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.0e-23 112.1 65 70.8
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 2.6e-22 110.2 64 78.1
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.7e-21 107.5 53 86.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 2.3e-18 97.1 89 55.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-17 94.7 61 73.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 2.7e-14 83.6 89 52.8
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 8.5e-13 78.6 58 62.1
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.5e-12 77.0 52 67.3
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 9.4e-12 75.1 52 69.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.2e-11 74.7 44 75.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 4.7e-11 72.8 54 66.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.3e-10 70.5 66 56.1
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 3.0e-10 70.1 54 61.1


User provided reference genes

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