Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025536 Solanum tuberosum HOM05D001550 ORTHO05D012654 3.1e-91 338.6 187 100.0
PGSC0003DMG400002259 Solanum tuberosum HOM05D001550 ORTHO05D012654 9.4e-48 194.1 174 64.9
Sopen08g021430 Solanum pennellii HOM05D001550 ORTHO05D012654 3.6e-47 192.2 163 77.9
PGSC0003DMG400015089 Solanum tuberosum HOM05D001550 ORTHO05D012654 7.5e-45 184.5 234 51.7
PGSC0003DMG400015091 Solanum tuberosum HOM05D001550 ORTHO05D012654 1.3e-44 183.7 158 68.4
PGSC0003DMG400002260 Solanum tuberosum HOM05D001550 ORTHO05D012654 4.1e-43 178.7 157 66.9
PGSC0003DMG400011983 Solanum tuberosum HOM05D001550 ORTHO05D012654 4.5e-42 175.3 238 52.1
Sopen08g021510 Solanum pennellii HOM05D001550 ORTHO05D012654 1.4e-38 163.7 163 61.3
Sopen08g021520 Solanum pennellii HOM05D001550 ORTHO05D012654 1.4e-38 163.7 163 61.3
Solyc08g067570.1 Solanum lycopersicum HOM05D001550 ORTHO05D012654 1.2e-37 160.6 163 60.7
Solyc08g067140.1 Solanum lycopersicum HOM05D001550 ORTHO05D012654 1.5e-37 160.2 179 58.1
Solyc12g017610.1 Solanum lycopersicum HOM05D001550 ORTHO05D012654 1.5e-37 160.2 161 59.6
Solyc08g067490.1 Solanum lycopersicum HOM05D001550 ORTHO05D012654 1.1e-35 154.1 160 67.5
Sopen12g008350 Solanum pennellii HOM05D001550 ORTHO05D012654 5.0e-33 145.2 165 55.2
PGSC0003DMG400002258 Solanum tuberosum HOM05D001550 ORTHO05D012654 2.9e-20 102.8 111 62.2
CAN.G280.29 Capsicum annuum HOM05D001550 ORTHO05D012654 2.7e-10 69.7 163 33.7
CAN.G21.8 Capsicum annuum HOM05D001550 ORTHO05D012654 2.3e-09 66.6 163 33.1
Nitab4.5_0004537g0020 Nicotiana tabacum HOM05D001550 ORTHO05D001611 5.1e-09 65.5 140 36.4
ATR0706G291 Amborella trichopoda HOM05D001550 ORTHO05D001611 8.6e-09 64.7 81 49.4
Nitab4.5_0000784g0050 Nicotiana tabacum HOM05D001550 ORTHO05D001611 1.5e-08 63.9 140 35.7
Solyc01g067600.3 Solanum lycopersicum HOM05D001550 ORTHO05D001611 1.5e-08 63.9 103 41.7
Sopen01g029560 Solanum pennellii HOM05D001550 ORTHO05D001611 1.5e-08 63.9 103 41.7
Psat3g023680 Pisum sativum HOM05D001550 ORTHO05D001611 4.3e-08 62.4 79 50.6
ClCG09G006210 Citrullus lanatus HOM05D001550 ORTHO05D001611 7.3e-08 61.6 81 48.1
MELO3C016046.2 Cucumis melo HOM05D001550 ORTHO05D001611 7.3e-08 61.6 81 48.1
CsaV3_7G028920 Cucumis sativus L. HOM05D001550 ORTHO05D001611 7.3e-08 61.6 81 48.1
Sed0016218 Sechium edule HOM05D001550 ORTHO05D001611 9.6e-08 61.2 90 47.8
arahy.Tifrunner.gnm1.ann1.1RFZ00 Arachis hypogaea HOM05D001550 ORTHO05D001611 1.2e-07 60.8 81 46.9
arahy.Tifrunner.gnm1.ann1.338AY0 Arachis hypogaea HOM05D001550 ORTHO05D001611 1.2e-07 60.8 81 46.9
Duzib138G1650 Durio zibethinus HOM05D001550 ORTHO05D001611 1.2e-07 60.8 77 48.1
Gorai.004G053100 Gossypium raimondii HOM05D001550 ORTHO05D001611 1.2e-07 60.8 81 46.9
Potri.014G132900 Populus trichocarpa HOM05D001550 ORTHO05D001611 1.2e-07 60.8 138 35.5
Sopen06g026130 Solanum pennellii HOM05D001550 ORTHO05D001611 1.2e-07 60.8 83 42.2
Sopen09g029550 Solanum pennellii HOM05D001550 ORTHO05D001611 1.2e-07 60.8 83 44.6
TWI59G0042 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 1.2e-07 60.8 83 48.2
Gohir.A08G073675 Gossypium hirsutum HOM05D001550 ORTHO05D001611 1.6e-07 60.5 77 49.4
PGR044G1975 Punica granatum HOM05D001550 ORTHO05D001611 1.6e-07 60.5 86 47.7
Lalb_Chr15g0078681 Lupinus albus HOM05D001550 ORTHO05D001611 2.1e-07 60.1 162 35.8
Aqoxy2G03050 Aquilegia oxysepala HOM05D001550 ORTHO05D001611 2.8e-07 59.7 57 54.4
Ca_09127_v3 Cicer arietinum L. HOM05D001550 ORTHO05D001611 2.8e-07 59.7 79 49.4
Gohir.D08G083100 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.8e-07 59.7 77 48.1
Gorai.004G086900 Gossypium raimondii HOM05D001550 ORTHO05D001611 2.8e-07 59.7 77 48.1
MBI19_g23996_MAGBIO Magnolia biondii HOM05D001550 ORTHO05D001611 2.8e-07 59.7 77 48.1
Manes.03G193000 Manihot esculenta HOM05D001550 ORTHO05D001611 2.8e-07 59.7 77 48.1
Hund18101 Selenicereus undatus HOM05D001550 ORTHO05D001611 2.8e-07 59.7 134 37.3
Actinidia09170 Actinidia chinensis HOM05D001550 ORTHO05D001611 3.6e-07 59.3 125 36.0
CAN.G223.17 Capsicum annuum HOM05D001550 ORTHO05D001611 3.6e-07 59.3 95 43.2
Dinv38304 Davidia involucrata HOM05D001550 ORTHO05D001611 3.6e-07 59.3 135 37.8
Lalb_Chr21g0306771 Lupinus albus HOM05D001550 ORTHO05D001611 3.6e-07 59.3 81 48.1
Sopen02g028330 Solanum pennellii HOM05D000262 ORTHO05D001611 3.6e-07 59.3 83 42.2
Sopen05g008200 Solanum pennellii HOM05D001550 ORTHO05D001611 3.6e-07 59.3 83 42.2
Actinidia00675 Actinidia chinensis HOM05D001550 ORTHO05D001611 4.7e-07 58.9 137 37.2
AL1G12440 Arabidopsis lyrata HOM05D001550 ORTHO05D001611 4.7e-07 58.9 109 37.6
Dinv30777 Davidia involucrata HOM05D001550 ORTHO05D001611 4.7e-07 58.9 97 41.2
Duzib133G1221 Durio zibethinus HOM05D001550 ORTHO05D001611 4.7e-07 58.9 79 48.1
FAN15G0221 Fragaria x ananassa HOM05D001550 ORTHO05D001611 4.7e-07 58.9 81 45.7
FAN20G2465 Fragaria x ananassa HOM05D001550 ORTHO05D001611 4.7e-07 58.9 81 45.7
FAN27G0147 Fragaria x ananassa HOM05D001550 ORTHO05D001611 4.7e-07 58.9 165 32.7
Gohir.A11G116500 Gossypium hirsutum HOM05D001550 ORTHO05D001611 4.7e-07 58.9 77 50.6
Lalb_Chr02g0143151 Lupinus albus HOM05D001550 ORTHO05D001611 4.7e-07 58.9 79 48.1
Sp1g01980 Schrenkiella parvula HOM05D001550 ORTHO05D001611 4.7e-07 58.9 127 35.4
TPR.G9286 Trifolium pratense HOM05D001550 ORTHO05D001611 4.7e-07 58.9 92 45.7
BraA10t42438Z Brassica rapa HOM05D001550 ORTHO05D001611 6.2e-07 58.5 146 34.9
Migut.D00180 Erythranthe guttata HOM05D001550 ORTHO05D001611 6.2e-07 58.5 81 45.7
Gohir.A08G043300 Gossypium hirsutum HOM05D001550 ORTHO05D001611 6.2e-07 58.5 81 45.7
Prupe.8G255400 Prunus persica HOM05D001550 ORTHO05D001611 6.2e-07 58.5 81 45.7
CiPaw.07G103300 Carya illinoinensis HOM05D001550 ORTHO05D001611 8.1e-07 58.2 93 44.1
CDE05G2265 Ceratophyllum demersum HOM05D001550 ORTHO05D001611 8.1e-07 58.2 127 37.8
Cc03_g02050 Coffea canephora HOM05D001550 ORTHO05D001611 8.1e-07 58.2 119 37.8
COL.COLO4_08001 Corchorus olitorius HOM05D001550 ORTHO05D001611 8.1e-07 58.2 77 46.8
Gohir.D11G121600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 8.1e-07 58.2 77 50.6
Gorai.007G130300 Gossypium raimondii HOM05D001550 ORTHO05D001611 8.1e-07 58.2 77 50.6
Lsat_1_v5_gn_8_54460 Lactuca sativa HOM05D001550 ORTHO05D001611 8.1e-07 58.2 143 32.9
PSO170G0358 Papaver somniferum HOM05D001550 ORTHO05D001611 8.1e-07 58.2 82 45.1
Sed0012078 Sechium edule HOM05D001550 ORTHO05D001611 8.1e-07 58.2 81 48.1
Hund05400 Selenicereus undatus HOM05D001550 ORTHO05D001611 8.1e-07 58.2 77 45.5
Sc05g0004350 Simmondsia chinensis HOM05D001550 ORTHO05D001611 8.1e-07 58.2 77 48.1
AT1G02990 Arabidopsis thaliana HOM05D001550 ORTHO05D001611 1.1e-06 57.8 109 36.7
BcaC07g40751 Brassica carinata HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 45.7
A09p54730 Brassica napus HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 45.7
C08p37590 Brassica napus HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 45.7
BolC8t51343H Brassica oleracea HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 45.7
BraA09t40882Z Brassica rapa HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 45.7
FvH4_2g25070 Fragaria vesca HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 44.4
FAN24G2366 Fragaria x ananassa HOM05D001550 ORTHO05D001611 1.1e-06 57.8 81 44.4
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 1.1e-06 57.8 81 44.4
TWI14G1206 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 1.1e-06 57.8 134 38.8
Aa31LG1G9590 Aethionema arabicum HOM05D001550 ORTHO05D001611 1.4e-06 57.4 121 35.5
CAN.G1777.3 Capsicum annuum HOM05D001550 ORTHO05D001611 1.4e-06 57.4 82 45.1
CDE02G0558 Ceratophyllum demersum HOM05D001550 ORTHO05D001611 1.4e-06 57.4 130 35.4
Eucgr.K03451 Eucalyptus grandis HOM05D001550 ORTHO05D001611 1.4e-06 57.4 81 44.4
Gohir.A12G009600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 1.4e-06 57.4 77 46.8
Gorai.008G009600 Gossypium raimondii HOM05D001550 ORTHO05D001611 1.4e-06 57.4 77 46.8
HanXRQChr15g0466021 Helianthus annuus HOM05D001550 ORTHO05D001611 1.4e-06 57.4 38 73.7
Manes.05G066000 Manihot esculenta HOM05D001550 ORTHO05D001611 1.4e-06 57.4 77 45.5
PSO210G3508 Papaver somniferum HOM05D001550 ORTHO05D001611 1.4e-06 57.4 82 42.7
Phvul.001G204500 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 1.4e-06 57.4 79 48.1
Phvul.009G246100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 1.4e-06 57.4 82 42.7
Sabra02G0150800 Salix brachista HOM05D001550 ORTHO05D001611 1.4e-06 57.4 82 45.1
Thecc.01G293700 Theobroma cacao HOM05D001550 ORTHO05D001611 1.4e-06 57.4 77 45.5
Zm00001eb330260 Zea mays HOM05D001550 ORTHO05D001611 1.4e-06 57.4 156 34.0
Actinidia40252 Actinidia chinensis HOM05D001550 ORTHO05D001611 1.8e-06 57.0 57 54.4
EL10Ac7g17519 Beta vulgaris HOM05D001550 ORTHO05D001611 1.8e-06 57.0 124 36.3
BcaC07g42282 Brassica carinata HOM05D001550 ORTHO05D001611 1.8e-06 57.0 87 42.5
CARHR173180 Cardamine hirsuta HOM05D001550 ORTHO05D001611 1.8e-06 57.0 82 45.1
Cpa.g.sc441.5 Carica papaya HOM05D001550 ORTHO05D001611 1.8e-06 57.0 81 45.7
Nn3g21383 Nelumbo nucifera HOM05D001550 ORTHO05D001611 1.8e-06 57.0 81 45.7
Oeu021108.1 Olea europaea HOM05D001550 ORTHO05D001611 1.8e-06 57.0 82 41.5
Sopen06g026720 Solanum pennellii HOM05D001550 ORTHO05D001611 1.8e-06 57.0 82 42.7
TWI23G1006 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 1.8e-06 57.0 163 35.0
VMungo1309G1422 Vigna mungo HOM05D001550 ORTHO05D001611 1.8e-06 57.0 139 36.0
GSVIVG01010964001 Vitis vinifera HOM05D001550 ORTHO05D001611 1.8e-06 57.0 133 37.6
Atru.chr5.1234 Acer truncatum HOM05D001550 ORTHO05D001611 2.4e-06 56.6 42 66.7
Actinidia01463 Actinidia chinensis HOM05D001550 ORTHO05D001611 2.4e-06 56.6 123 39.0
Actinidia21067 Actinidia chinensis HOM05D001550 ORTHO05D001611 2.4e-06 56.6 134 32.8
AL5G45670 Arabidopsis lyrata HOM05D001550 ORTHO05D001611 2.4e-06 56.6 82 43.9
AT3G62900 Arabidopsis thaliana HOM05D001550 ORTHO05D001611 2.4e-06 56.6 82 43.9
Cfa005989 Carpinus fangiana HOM05D001550 ORTHO05D001611 2.4e-06 56.6 42 66.7
Glyma.03G211200 Glycine max HOM05D001550 ORTHO05D001611 2.4e-06 56.6 79 46.8
Glyma.19G208400 Glycine max HOM05D001550 ORTHO05D001611 2.4e-06 56.6 79 46.8
Lj6C673T5 Lonicera japonica HOM05D001550 ORTHO05D001611 2.4e-06 56.6 42 69.0
Medtr7g108330 Medicago truncatula HOM05D001550 ORTHO05D001611 2.4e-06 56.6 42 69.0
Rhsim04G0219600 Rhododendron simsii HOM05D001550 ORTHO05D001611 2.4e-06 56.6 42 66.7
unitig_0.g1182 Utricularia gibba HOM05D001550 ORTHO05D001611 2.4e-06 56.6 103 40.8
Zm00001eb111100 Zea mays HOM05D001550 ORTHO05D001611 2.4e-06 56.6 155 34.2
BcaB02g07313 Brassica carinata HOM05D001550 ORTHO05D001611 3.1e-06 56.2 146 36.3
BcaC05g24581 Brassica carinata HOM05D001550 ORTHO05D001611 3.1e-06 56.2 143 33.6
C05p01610 Brassica napus HOM05D001550 ORTHO05D001611 3.1e-06 56.2 143 33.6
BolC5t28940H Brassica oleracea HOM05D001550 ORTHO05D001611 3.1e-06 56.2 143 33.6
AUR62008557 Chenopodium quinoa HOM05D001550 ORTHO05D001611 3.1e-06 56.2 78 44.9
Lalb_Chr15g0083591 Lupinus albus HOM05D001550 ORTHO05D001611 3.1e-06 56.2 144 32.6
Os07g0669800 Oryza sativa ssp. japonica HOM05D001550 ORTHO05D001611 3.1e-06 56.2 141 36.9
PGR119G2331 Punica granatum HOM05D001550 ORTHO05D001611 3.1e-06 56.2 81 44.4
TAR362G0978 Trochodendron aralioides HOM05D001550 ORTHO05D001611 3.1e-06 56.2 81 43.2
MSTRG.10083 Avicennia marina HOM05D001550 ORTHO05D001611 4.0e-06 55.8 42 64.3
CSS0012470 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 4.0e-06 55.8 136 33.1
DCAR_005810 Daucus carota HOM05D001550 ORTHO05D001611 4.0e-06 55.8 42 64.3
Thhalv10005746m.g Eutrema salsugineum HOM05D001550 ORTHO05D001611 4.0e-06 55.8 81 44.4
Gohir.D12G009600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 4.0e-06 55.8 77 46.8
Nn4g25933 Nelumbo nucifera HOM05D001550 ORTHO05D001611 4.0e-06 55.8 96 39.6
Potri.002G209409 Populus trichocarpa HOM05D001550 ORTHO05D001611 4.0e-06 55.8 155 33.5
QL12p030643 Quercus lobata HOM05D001550 ORTHO05D001611 4.0e-06 55.8 81 45.7
RcHm_v2.0_Chr6g0293091 Rosa chinensis HOM05D001550 ORTHO05D001611 4.0e-06 55.8 82 45.1
THA.LOC104802158 Tarenaya hassleriana HOM05D001550 ORTHO05D001611 4.0e-06 55.8 81 45.7
TWI09G0200 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 4.0e-06 55.8 133 33.1
CSS0040603 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 5.2e-06 55.5 77 41.6
Haze_01233 Corylus avellana HOM05D001550 ORTHO05D001611 5.2e-06 55.5 124 36.3
Dinv19735 Davidia involucrata HOM05D001550 ORTHO05D001611 5.2e-06 55.5 81 44.4
ECA236G1714 Erigeron canadensis HOM05D001550 ORTHO05D001611 5.2e-06 55.5 42 64.3
ECA247G2733 Erigeron canadensis HOM05D001550 ORTHO05D001611 5.2e-06 55.5 42 66.7
Migut.G00180 Erythranthe guttata HOM05D001550 ORTHO05D001611 5.2e-06 55.5 84 42.9
Eucgr.H03883 Eucalyptus grandis HOM05D001550 ORTHO05D001611 5.2e-06 55.5 118 39.0
HanXRQChr04g0118131 Helianthus annuus HOM05D001550 ORTHO05D001611 5.2e-06 55.5 42 64.3
Sp5g00620 Schrenkiella parvula HOM05D001550 ORTHO05D001611 5.2e-06 55.5 82 42.7
TAR633G2809 Trochodendron aralioides HOM05D001550 ORTHO05D001611 5.2e-06 55.5 81 44.4
TAR636G3189 Trochodendron aralioides HOM05D001550 ORTHO05D001611 5.2e-06 55.5 81 44.4
vmacro08125 Vaccinium macrocarpon HOM05D001550 ORTHO05D001611 5.2e-06 55.5 119 37.0
CSS0005237 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 6.8e-06 55.1 145 35.2
CARHR002320 Cardamine hirsuta HOM05D001550 ORTHO05D001611 6.8e-06 55.1 128 32.8
Ca_02419_v3 Cicer arietinum L. HOM05D001550 ORTHO05D001611 6.8e-06 55.1 80 46.2
MD11G1301800 Malus domestica HOM05D001550 ORTHO05D001611 6.8e-06 55.1 81 43.2
PSO210G1805 Papaver somniferum HOM05D001550 ORTHO05D001611 6.8e-06 55.1 187 31.6
Peaxi162Scf00386g00034 Petunia axillaris HOM05D001550 ORTHO05D001611 6.8e-06 55.1 64 54.7
SalBow2G2718 Salvia bowleyana HOM05D001550 ORTHO05D001611 6.8e-06 55.1 156 33.3
Cc01_g20490 Coffea canephora HOM05D001550 ORTHO05D001611 8.9e-06 54.7 81 45.7
DCAR_002805 Daucus carota HOM05D001550 ORTHO05D001611 8.9e-06 54.7 81 42.0
Duzib151G0932 Durio zibethinus HOM05D001550 ORTHO05D001611 8.9e-06 54.7 38 71.1
QL03p007439 Quercus lobata HOM05D001550 ORTHO05D001611 8.9e-06 54.7 140 30.0
QL03p007656 Quercus lobata HOM05D001550 ORTHO05D001611 8.9e-06 54.7 140 30.0
Hund07080 Selenicereus undatus HOM05D001550 ORTHO05D001611 8.9e-06 54.7 77 41.6
SGA_v2.0_scaffold1G00389 Striga asiatica HOM05D001550 ORTHO05D001611 8.9e-06 54.7 81 44.4
Thecc.04G282200 Theobroma cacao HOM05D001550 ORTHO05D001611 8.9e-06 54.7 128 35.9
GSVIVG01000094001 Vitis vinifera HOM05D001550 ORTHO05D001611 8.9e-06 54.7 41 63.4


User provided reference genes

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