Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.6e-97 358.6 167 100.0
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 9.2e-95 350.1 167 95.8
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 9.2e-95 350.1 167 95.8
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.1e-82 308.5 167 84.4
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.4e-79 297.7 167 80.8
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.2e-78 296.6 168 80.4
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.6e-78 296.2 167 80.2
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 2.1e-70 269.2 167 70.1
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 73.1
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 73.1
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.1e-68 263.5 167 71.9
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.5e-68 263.1 167 70.1
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 69.5
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.3e-68 261.9 167 70.1
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 71.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 70.1
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 70.1
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 71.3
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 3.6e-67 258.5 167 68.3
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.6e-67 258.5 166 68.7
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 3.6e-67 258.5 167 69.5
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 3.6e-67 258.5 167 71.3
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 3.6e-67 258.5 167 68.3
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.9
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.9
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 68.3
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 4.0e-66 255.0 167 68.3
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 6.9e-66 254.2 166 68.1
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 69.5
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 69.5
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 69.5
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 69.5
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-65 253.4 166 68.1
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.2e-65 253.4 166 68.1
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.5e-65 253.1 167 68.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.5e-65 253.1 167 68.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.5e-65 253.1 166 68.7
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 2.0e-65 252.7 167 66.5
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 7.6e-65 250.8 167 68.9
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 67.7
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.7e-64 249.6 167 67.1
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.7e-64 249.6 167 67.7
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 2.2e-64 249.2 167 67.1
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.2e-64 249.2 167 67.7
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 3.8e-64 248.4 167 67.7
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.9e-64 248.1 164 68.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.9e-64 248.1 179 63.7
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 4.9e-64 248.1 167 67.1
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 8.4e-64 247.3 167 67.7
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.4e-63 246.5 167 65.3
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 3.2e-63 245.4 164 67.1
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.2e-62 243.4 167 65.3
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.7e-62 242.3 166 63.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.0e-62 241.1 167 64.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 7.9e-62 240.7 164 67.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.0e-61 240.4 167 64.1
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 2.3e-61 239.2 167 63.5
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.3e-61 239.2 165 66.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.3e-61 239.2 165 66.7
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.9e-61 238.4 167 64.7
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 6.7e-61 237.7 167 63.5
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.1e-60 236.9 168 64.3
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.1e-60 236.9 168 64.3
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.5e-60 236.5 168 64.3
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 64.3
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.9e-60 236.1 167 62.9
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 64.3
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.9e-60 236.1 164 64.6
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 2.5e-60 235.7 167 63.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 63.7
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 4.3e-60 235.0 167 63.5
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 5.6e-60 234.6 168 63.7
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 5.6e-60 234.6 168 63.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 5.6e-60 234.6 166 63.9
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 5.6e-60 234.6 174 61.5
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 7.4e-60 234.2 168 63.7
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 7.4e-60 234.2 168 63.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 7.4e-60 234.2 168 63.7
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 7.4e-60 234.2 167 62.3
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 9.6e-60 233.8 168 62.5
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 2.1e-59 232.6 167 64.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-59 232.6 168 63.7
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.1e-59 230.7 167 61.7
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 3.1e-58 228.8 189 57.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 6.9e-58 227.6 167 59.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.0e-57 226.1 168 63.1
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.0e-57 226.1 178 60.1
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.0e-57 226.1 167 62.9
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 5.8e-57 224.6 167 65.9
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 9.9e-57 223.8 168 63.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 1.3e-56 223.4 167 61.1
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.3e-56 223.4 164 62.8
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.7e-56 223.0 131 76.3
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.1e-55 220.3 167 59.3
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 5.5e-55 218.0 167 56.9
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 2.1e-54 216.1 167 56.3
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 2.7e-54 215.7 203 51.2
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.5e-54 215.3 173 57.8
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.0e-53 213.8 219 48.9
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 1.9e-52 209.5 165 60.0
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.5e-52 209.1 189 51.3
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 9.6e-52 207.2 156 59.6
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 9.6e-52 207.2 189 54.0
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.4e-50 202.6 165 57.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 2.0e-49 199.5 167 53.9
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 3.4e-49 198.7 137 63.5
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.2e-46 190.3 166 55.4
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-46 189.5 127 64.6
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 2.1e-46 189.5 166 53.6
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.8e-45 186.4 134 63.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 7.4e-44 181.0 167 49.1
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.3e-43 177.9 126 61.9
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 8.2e-43 177.6 166 50.0
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 6.9e-42 174.5 167 51.5
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.2e-41 173.7 176 45.5
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.0e-40 170.6 167 49.1
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.3e-40 170.2 177 50.3
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 2.2e-40 169.5 116 65.5
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 7.2e-39 164.5 165 46.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.8e-37 159.8 134 53.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-37 159.5 133 54.1
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 5.1e-37 158.3 122 58.2
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 8.8e-37 157.5 164 47.0
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.5e-36 156.8 166 44.0
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 9.7e-36 154.1 160 46.9
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.7e-35 153.3 164 46.3
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-35 151.8 130 53.8
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 8.2e-35 151.0 97 66.0
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 8.2e-35 151.0 97 66.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.2e-33 147.1 131 57.3
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 7.7e-33 144.4 117 58.1
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.3e-32 143.7 98 62.2
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.4e-31 137.5 158 43.0
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.7e-30 136.0 150 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 3.9e-29 132.1 127 45.7
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 4.8e-27 125.2 148 48.0
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 8.2e-27 124.4 97 57.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.2e-22 110.5 183 39.3
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.0e-21 107.5 112 50.0
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.3e-21 106.3 165 37.6
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.0e-21 105.9 165 37.0
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.9e-21 105.5 101 54.5
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.1e-20 104.0 79 55.7
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.2e-19 97.8 123 39.0
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.5e-15 85.1 60 60.0
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-15 84.7 60 60.0
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-14 84.0 57 61.4
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.6e-14 83.6 89 44.9
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.6e-14 82.4 58 60.3
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 60 58.3
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-12 77.0 57 57.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.3e-12 75.9 57 56.1
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 3.3e-12 75.9 166 27.7
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.1e-10 70.9 115 33.9
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.3e-08 63.9 61 45.9
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.9e-07 60.1 54 57.4
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 4.2e-07 58.9 41 58.5
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 5.5e-07 58.5 36 72.2
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 9.4e-07 57.8 83 34.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.7e-06 56.2 40 67.5
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 3.6e-06 55.8 45 60.0
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.7e-06 55.5 40 55.0


User provided reference genes

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