Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.6e-51 205.3 108 100.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.2e-41 173.7 112 87.5
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.0e-41 172.9 110 85.5
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 5.1e-29 131.7 109 76.1
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 5.7e-28 128.3 109 73.4
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 3.0e-21 105.9 107 60.7
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.3e-16 90.5 115 52.2
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.8e-13 80.1 72 61.1
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.8e-13 80.1 98 50.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.0e-13 79.3 106 49.1
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.0e-13 79.3 48 77.1
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 8.8e-13 77.8 110 47.3
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-12 77.4 106 48.1
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.1e-12 77.4 85 55.3
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.1e-12 77.4 50 72.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.0e-12 76.6 40 90.0
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.5e-12 76.3 109 50.5
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.5e-12 76.3 40 90.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.5e-12 76.3 49 79.6
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.3e-12 75.9 112 52.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 4.3e-12 75.5 99 49.5
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 4.3e-12 75.5 98 46.9
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 5.7e-12 75.1 45 77.8
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 7.4e-12 74.7 40 85.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 7.4e-12 74.7 40 85.0
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 7.4e-12 74.7 51 72.5
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 7.4e-12 74.7 82 56.1
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 9.7e-12 74.3 40 85.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.7e-11 73.6 102 47.1
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.7e-11 73.6 91 50.5
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.7e-11 73.6 57 66.7
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.7e-11 73.6 40 87.5
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.2e-11 73.2 81 53.1
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 2.2e-11 73.2 48 72.9
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.8e-11 72.8 93 50.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 3.7e-11 72.4 87 51.7
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.8e-11 72.0 40 82.5
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 4.8e-11 72.0 42 76.2
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 4.8e-11 72.0 48 72.9
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.8e-11 72.0 97 48.5
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 4.8e-11 72.0 40 82.5
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 6.3e-11 71.6 106 47.2
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.3e-11 71.6 72 54.2
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 6.3e-11 71.6 40 80.0
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 6.3e-11 71.6 64 60.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 6.3e-11 71.6 65 55.4
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 8.2e-11 71.2 63 63.5
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 8.2e-11 71.2 40 82.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.1e-10 70.9 102 48.0
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.1e-10 70.9 102 48.0
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.1e-10 70.9 102 48.0
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.1e-10 70.9 41 78.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.1e-10 70.9 103 43.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.1e-10 70.9 64 56.2
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.1e-10 70.9 103 43.7
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.1e-10 70.9 40 80.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.1e-10 70.9 47 72.3
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.4e-10 70.5 85 55.3
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-10 70.5 49 75.5
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-10 70.5 49 75.5
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.4e-10 70.5 93 50.5
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-10 70.5 41 78.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.4e-10 70.5 41 78.0
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.4e-10 70.5 42 76.2
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.8e-10 70.1 109 45.9
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.8e-10 70.1 41 78.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.8e-10 70.1 41 78.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.8e-10 70.1 35 88.6
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.8e-10 70.1 40 80.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.8e-10 70.1 40 80.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.8e-10 70.1 40 80.0
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.8e-10 70.1 100 48.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.4e-10 69.7 36 86.1
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.4e-10 69.7 117 42.7
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-10 69.7 41 78.0
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.4e-10 69.7 39 79.5
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.4e-10 69.7 39 82.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-10 69.3 41 75.6
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-10 69.3 40 77.5
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.1e-10 69.3 40 77.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 3.1e-10 69.3 107 42.1
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 4.1e-10 68.9 59 61.0
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 4.1e-10 68.9 53 66.0
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 4.1e-10 68.9 42 76.2
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 5.3e-10 68.6 41 75.6
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 5.3e-10 68.6 41 78.0
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 5.3e-10 68.6 85 51.8
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 5.3e-10 68.6 80 55.0
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 6.9e-10 68.2 41 78.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 6.9e-10 68.2 40 75.0
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 9.1e-10 67.8 98 46.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 9.1e-10 67.8 91 46.2
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 9.1e-10 67.8 91 46.2
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 9.1e-10 67.8 98 46.9
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 9.1e-10 67.8 87 51.7
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 9.1e-10 67.8 40 75.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 9.1e-10 67.8 83 53.0
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-09 67.4 40 75.0
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.2e-09 67.4 55 65.5
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.2e-09 67.4 99 48.5
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.5e-09 67.0 36 80.6
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.5e-09 67.0 37 78.4
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.5e-09 67.0 32 93.8
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 2.0e-09 66.6 40 77.5
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.0e-09 66.6 92 48.9
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.4e-09 65.9 40 77.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 4.5e-09 65.5 108 39.8
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 4.5e-09 65.5 109 44.0
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.5e-09 65.5 108 44.4
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 7.7e-09 64.7 40 75.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.7e-08 63.5 32 87.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.2e-08 63.2 32 84.4
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.2e-08 63.2 35 80.0
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.2e-08 63.2 40 72.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.9e-08 62.8 105 43.8
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.8e-08 62.4 83 48.2
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 3.8e-08 62.4 32 84.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 5.0e-08 62.0 43 65.1
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 5.0e-08 62.0 32 84.4
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 6.5e-08 61.6 93 44.1
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 6.5e-08 61.6 91 49.5
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.4e-07 60.5 106 39.6
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.4e-07 60.5 41 68.3
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.4e-07 60.5 32 81.2
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 9.4e-07 57.8 58 53.4


User provided reference genes

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