Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.6e-127 458.8 233 100.0
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.7e-124 448.7 233 98.3
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 6.5e-123 444.1 233 97.4
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.6e-97 359.8 235 82.6
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.8e-89 332.4 237 75.9
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.1e-88 328.9 235 76.2
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.8e-87 324.7 235 73.6
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.8e-87 323.9 240 73.8
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.9e-86 322.4 240 73.3
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 3.5e-84 315.5 235 72.3
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.6e-84 315.1 234 73.5
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.6e-76 290.0 237 68.8
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.4e-72 276.9 177 78.5
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 4.0e-72 275.4 205 68.8
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 6.9e-72 274.6 186 72.6
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 8.9e-72 274.2 234 64.1
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.6e-71 272.7 214 65.4
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-71 272.7 239 66.5
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 3.4e-71 272.3 206 67.5
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 4.4e-71 271.9 162 80.9
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 4.4e-71 271.9 197 72.1
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 5.8e-71 271.6 232 63.8
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.6e-71 271.2 220 63.2
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.6e-71 271.2 185 72.4
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 9.9e-71 270.8 178 73.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.7e-70 270.0 207 66.2
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-70 269.6 220 63.2
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.2e-70 269.6 211 65.4
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 2.9e-70 269.2 210 65.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 2.9e-70 269.2 210 69.0
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 6.4e-70 268.1 210 63.8
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 8.4e-70 267.7 194 69.1
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 8.4e-70 267.7 202 65.3
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-69 267.3 192 67.7
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-69 267.3 192 67.7
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.1e-69 267.3 192 67.7
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.1e-69 267.3 197 69.5
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.4e-69 266.9 190 68.4
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.4e-69 266.9 201 66.2
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.2e-69 265.8 192 69.3
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.2e-69 265.8 192 67.7
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.2e-69 265.4 192 67.7
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.2e-69 265.4 192 67.7
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 4.2e-69 265.4 190 69.5
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 7.1e-69 264.6 180 72.2
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 9.3e-69 264.2 217 65.0
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.2e-68 263.8 215 64.7
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.2e-68 263.8 215 64.7
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.6e-68 263.5 165 76.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.6e-68 263.5 192 67.2
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.7e-68 262.7 208 64.4
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 2.7e-68 262.7 193 68.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.7e-68 262.7 185 70.3
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 3.5e-68 262.3 192 68.8
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.5e-68 262.3 208 63.9
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 6.0e-68 261.5 208 64.4
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 6.0e-68 261.5 198 66.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 7.8e-68 261.2 210 63.3
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 7.8e-68 261.2 196 66.8
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.0e-67 260.8 161 77.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-67 260.8 177 72.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.3e-67 260.4 165 75.2
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.3e-67 260.4 200 65.0
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-67 260.0 218 61.0
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.7e-67 260.0 169 74.6
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.3e-67 259.6 202 64.4
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.3e-67 259.6 183 70.5
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.0e-67 259.2 186 68.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.0e-67 259.2 189 68.8
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.0e-67 259.2 201 66.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 3.9e-67 258.8 202 65.8
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.1e-67 258.5 191 68.6
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 5.1e-67 258.5 162 76.5
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 6.6e-67 258.1 165 74.5
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 6.6e-67 258.1 203 65.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.7e-67 257.7 186 69.4
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 8.7e-67 257.7 190 67.9
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 8.7e-67 257.7 214 62.6
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.1e-66 257.3 186 69.4
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.9e-66 256.5 186 68.8
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.9e-66 256.5 186 68.8
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.5e-66 256.1 216 60.6
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 3.3e-66 255.8 200 64.5
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 3.3e-66 255.8 220 61.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 4.3e-66 255.4 169 72.8
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 7.3e-66 254.6 186 67.7
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 9.6e-66 254.2 162 75.9
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 9.6e-66 254.2 202 64.9
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 9.6e-66 254.2 165 73.3
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 9.6e-66 254.2 166 73.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-65 253.8 212 67.5
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.6e-65 252.3 203 64.5
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.1e-64 250.8 209 60.8
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.4e-64 249.6 205 62.0
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 6.9e-64 248.1 158 76.6
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 6.9e-64 248.1 202 61.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.2e-63 247.3 161 72.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 3.4e-63 245.7 177 68.4
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 7.6e-63 244.6 218 60.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 7.6e-63 244.6 146 80.8
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.3e-62 243.8 208 60.1
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.2e-62 243.0 162 68.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 4.9e-62 241.9 200 61.5
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 6.4e-62 241.5 200 60.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 8.4e-62 241.1 207 60.9
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.1e-61 240.7 193 63.2
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.2e-61 239.2 199 61.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.2e-61 238.8 215 59.5
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 5.4e-61 238.4 184 64.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 5.4e-61 238.4 182 66.5
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.6e-60 236.9 165 68.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.7e-60 236.1 188 72.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 3.5e-60 235.7 141 79.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.3e-59 233.8 186 65.6
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 8.7e-59 231.1 138 79.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 8.7e-59 231.1 229 55.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-58 230.7 175 65.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.1e-58 230.7 139 77.0
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.5e-58 230.3 196 61.2
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.5e-58 229.6 178 64.6
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.3e-57 227.3 158 67.1
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.1e-57 226.5 229 54.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 6.2e-57 224.9 138 75.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 6.2e-57 224.9 155 65.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.4e-56 223.8 216 56.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.8e-56 223.4 154 70.8
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.4e-56 223.0 231 52.8
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 6.9e-56 221.5 160 66.9
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 4.5e-55 218.8 162 64.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 3.8e-54 215.7 139 74.1
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.9e-53 213.4 144 72.9
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 3.5e-52 209.1 220 52.7
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 8.7e-51 204.5 132 72.7
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 9.6e-50 201.1 127 72.4
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 4.5e-47 192.2 145 62.1
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.0e-46 191.0 153 65.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.8e-46 189.1 144 61.1
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 4.9e-46 188.7 177 59.3
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-45 186.8 167 61.7
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.2e-44 184.1 138 65.9
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.6e-44 182.2 175 57.7
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 9.7e-42 174.5 106 79.2
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.4e-40 169.9 115 73.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.5e-37 158.7 116 62.9
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.6e-36 155.6 97 74.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.1e-35 152.1 150 49.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 3.3e-34 149.4 134 59.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.3e-32 142.1 183 47.0
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-31 140.6 110 65.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.6e-31 139.8 132 50.8
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-30 137.9 77 85.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-30 137.5 218 42.7
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-29 134.4 77 83.1
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.2e-29 132.5 183 45.4
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 4.2e-29 132.5 74 81.1
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 4.5e-23 112.5 100 60.0
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 5.0e-22 109.0 73 75.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-22 108.2 80 65.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.4e-21 107.5 98 58.2
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.7e-20 103.2 118 48.3
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.8e-17 92.4 70 64.3
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-15 87.8 103 46.6
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-14 84.0 46 80.4
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-12 77.0 52 69.2
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.6e-12 76.3 42 83.3
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-12 75.9 42 81.0
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 9.7e-10 68.2 125 36.0
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-07 61.2 32 87.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.6e-07 60.8 83 47.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.5e-07 59.7 37 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 6.5e-06 55.5 46 58.7


User provided reference genes

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