Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.2e-262 907.5 465 100.0
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.2e-210 735.7 465 83.9
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 9.1e-193 677.2 417 86.3
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 3.0e-175 619.0 489 71.6
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.9e-130 469.5 560 53.0
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.2e-129 466.1 574 50.7
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 3.5e-128 462.6 563 51.9
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.9e-127 459.1 563 51.3
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 8.7e-127 458.0 545 50.5
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 4.3e-126 455.7 558 50.4
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.1e-125 453.4 518 55.4
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.9e-122 443.0 505 55.4
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.9e-121 440.3 573 48.9
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.3e-117 427.6 552 49.3
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.1e-116 422.9 552 48.2
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.0e-115 420.2 508 50.2
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 3.4e-115 419.5 552 48.0
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.0e-114 417.9 552 48.2
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.0e-114 417.9 510 50.2
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 3.8e-114 416.0 538 47.6
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.9e-113 413.7 543 47.5
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.1e-112 410.2 541 46.8
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 3.6e-112 409.5 536 47.2
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.0e-111 407.9 454 53.5
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 5.1e-111 405.6 525 48.2
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 6.7e-111 405.2 541 47.7
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 8.8e-111 404.8 453 51.4
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.1e-110 404.4 521 48.4
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 4.3e-110 402.5 519 47.6
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 5.7e-110 402.1 535 47.5
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 5.7e-110 402.1 520 47.1
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 7.4e-110 401.7 534 46.8
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 2.2e-109 400.2 518 46.7
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.2e-109 400.2 518 46.7
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.2e-109 400.2 527 47.2
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 2.2e-109 400.2 516 48.3
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 4.8e-109 399.1 520 46.5
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 6.3e-109 398.7 527 47.1
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.8e-108 397.1 506 47.4
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 3.1e-108 396.4 523 46.5
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 3.1e-108 396.4 525 46.1
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 5.3e-108 395.6 506 48.8
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.0e-106 391.3 521 46.4
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.3e-106 391.0 519 47.0
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.3e-106 391.0 449 49.7
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.2e-106 390.2 474 48.7
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.2e-106 390.2 449 49.4
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.2e-106 390.2 538 45.7
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.8e-106 389.4 529 45.6
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 6.5e-106 388.7 519 45.7
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.1e-105 387.9 502 46.6
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.9e-105 387.1 530 44.7
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 4.2e-105 386.0 539 45.8
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 4.2e-105 386.0 519 44.7
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 5.5e-105 385.6 467 47.5
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 9.4e-105 384.8 531 45.8
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.2e-104 384.4 530 45.3
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.2e-104 384.4 453 48.6
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.2e-104 384.4 443 51.0
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.6e-104 384.0 443 51.5
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.6e-104 384.0 536 45.1
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.1e-104 383.6 507 46.2
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 3.6e-104 382.9 468 48.3
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 3.6e-104 382.9 510 47.1
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 6.1e-104 382.1 443 50.1
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 7.9e-104 381.7 443 50.8
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 2.3e-103 380.2 500 46.6
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.3e-103 380.2 453 48.6
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 6.7e-103 378.6 442 50.5
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 6.7e-103 378.6 514 46.1
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 8.8e-103 378.3 503 45.7
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.1e-102 377.9 443 50.1
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.1e-102 377.9 550 45.1
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 2.0e-102 377.1 443 50.1
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 2.6e-102 376.7 534 44.4
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.6e-102 376.7 513 46.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 3.3e-102 376.3 443 49.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 3.3e-102 376.3 443 49.9
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.4e-102 375.9 442 50.2
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.4e-102 375.9 510 46.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 9.7e-102 374.8 513 46.0
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 9.7e-102 374.8 531 45.4
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 9.7e-102 374.8 553 44.8
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.3e-101 374.4 533 45.6
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.8e-101 373.2 441 49.2
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.8e-101 372.5 467 47.3
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 6.3e-101 372.1 445 48.5
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 8.2e-101 371.7 515 45.6
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 2.4e-100 370.2 422 50.5
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 3.1e-100 369.8 462 47.6
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 9.1e-100 368.2 423 51.1
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.2e-99 367.9 504 46.0
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.0e-99 367.1 439 50.1
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.5e-99 365.9 419 50.6
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 6.5e-98 362.1 450 47.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.5e-97 360.9 448 48.4
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.1e-96 357.1 435 48.0
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.7e-96 356.7 419 49.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 8.0e-96 355.1 536 43.3
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.3e-95 353.6 467 45.8
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.6e-91 340.9 439 46.0
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 1.3e-90 337.8 637 38.5
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 2.9e-90 336.7 499 43.7
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 3.6e-88 329.7 474 48.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 7.0e-84 315.5 503 39.6
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 7.7e-83 312.0 373 48.8
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 2.9e-82 310.1 314 57.0
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 4.7e-80 302.8 323 54.8
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.4e-79 301.2 436 42.7
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 6.1e-72 275.8 438 40.0
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.5e-70 268.9 386 45.6
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 3.7e-69 266.5 437 39.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.2e-67 261.5 433 39.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.3e-55 220.7 170 65.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 5.2e-55 219.5 447 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.3e-50 204.9 287 42.5
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.9e-42 176.8 486 30.2
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 7.6e-38 162.5 484 28.7
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.1e-36 158.7 151 58.9
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 7.9e-27 125.9 195 44.1
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 9.6e-25 119.0 91 64.8
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.9e-21 107.5 130 45.4
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 9.3e-20 102.4 481 24.7
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.7e-16 90.5 108 46.3
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 8.1e-16 89.4 147 35.4
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.1e-15 89.0 83 55.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 8.4e-13 79.3 104 45.2
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.3e-12 75.9 121 46.3
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-10 72.0 121 45.5
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.7e-10 69.3 58 56.9
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 6.3e-08 63.2 129 38.0


User provided reference genes

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