Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 2.8e-97 358.6 182 100.0
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 1.3e-89 333.2 182 94.0
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 1.6e-87 326.2 182 92.3
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 6.1e-84 314.3 182 86.3
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 3.0e-83 312.0 182 85.2
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 9.1e-72 273.9 157 87.9
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 5.9e-71 271.2 141 97.2
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 5.2e-67 258.1 182 70.3
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 8.8e-67 257.3 176 71.6
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 1.3e-65 253.4 180 70.0
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.3e-65 250.8 177 70.1
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.1e-64 250.4 182 68.1
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.8e-64 249.6 174 71.8
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 1.8e-64 249.6 177 69.5
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.1e-64 248.8 180 68.9
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.1e-64 248.8 180 68.9
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 7.0e-64 247.7 177 68.9
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.2e-63 246.9 177 69.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-63 246.5 177 68.9
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-63 246.1 177 68.9
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.0e-63 246.1 180 68.9
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 2.7e-63 245.7 171 70.8
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 5.9e-63 244.6 176 69.9
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 5.9e-63 244.6 179 69.8
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 3.8e-62 241.9 176 69.9
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.1e-61 240.4 180 66.7
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 1.5e-61 240.0 180 67.8
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 2.5e-61 239.2 173 67.6
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 3.3e-61 238.8 181 66.3
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 4.3e-61 238.4 181 66.9
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 1.2e-60 236.9 178 68.0
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.6e-60 236.5 182 65.4
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 8.0e-60 234.2 181 65.7
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.4e-59 233.4 175 67.4
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 1.8e-59 233.0 172 67.4
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 2.3e-59 232.6 174 66.1
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 5.2e-59 231.5 171 68.4
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 8.9e-59 230.7 180 64.4
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 8.9e-59 230.7 180 64.4
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.5e-58 229.9 180 66.1
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 2.0e-58 229.6 178 64.0
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 2.6e-58 229.2 156 72.4
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.4e-58 228.4 180 63.9
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 7.5e-58 227.6 177 62.1
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 2.9e-57 225.7 159 69.2
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 1.4e-56 223.4 178 62.9
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 9.2e-56 220.7 177 61.6
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 9.2e-56 220.7 168 62.5
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 1.6e-55 219.9 171 62.6
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 2.7e-55 219.2 177 61.6
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 3.5e-55 218.8 192 58.3
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 5.9e-55 218.0 177 61.6
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 5.9e-55 218.0 169 63.3
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 7.8e-55 217.6 170 62.9
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 1.0e-54 217.2 177 61.0
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.3e-54 216.1 155 69.0
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 5.0e-54 214.9 175 61.1
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 8.6e-54 214.2 174 62.6
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 1.5e-53 213.4 177 59.9
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 7.3e-53 211.1 175 60.0
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 7.3e-53 211.1 177 60.5
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.6e-52 209.9 170 62.9
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 2.8e-52 209.1 177 57.6
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 2.8e-52 209.1 177 57.6
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 2.8e-52 209.1 166 63.9
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 3.6e-52 208.8 177 57.6
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 6.2e-52 208.0 175 58.9
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 8.0e-52 207.6 170 60.6
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 8.0e-52 207.6 178 57.3
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.0e-51 207.2 177 60.5
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 1.4e-51 206.8 178 57.9
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 3.1e-51 205.7 170 61.2
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 6.8e-51 204.5 171 57.9
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 6.8e-51 204.5 176 59.7
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 8.9e-51 204.1 176 58.5
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 7.5e-50 201.1 170 59.4
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 9.8e-50 200.7 170 58.8
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.3e-49 200.3 166 62.0
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 2.2e-49 199.5 176 58.0
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 2.9e-49 199.1 175 55.4
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 2.9e-49 199.1 165 58.8
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 2.9e-49 199.1 152 62.5
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 6.4e-49 198.0 171 56.7
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 1.4e-48 196.8 154 64.9
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 7.0e-48 194.5 157 60.5
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 3.3e-45 185.7 170 56.5
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 1.1e-43 180.6 192 53.1
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 4.0e-43 178.7 191 52.9
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.7e-41 173.3 189 49.2
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 9.2e-40 167.5 132 61.4
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 2.1e-39 166.4 128 64.8
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 2.1e-39 166.4 131 61.1
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 1.3e-38 163.7 128 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 3.0e-38 162.5 184 46.2
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 3.9e-38 162.2 130 62.3
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 3.9e-38 162.2 122 63.1
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 6.6e-38 161.4 128 61.7
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 3.3e-37 159.1 175 49.1
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 2.3e-35 152.9 129 61.2
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.5e-34 150.2 196 44.4
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 8.4e-33 144.4 98 69.4
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.2e-31 140.6 103 68.9
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 3.3e-29 132.5 165 45.5
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 3.8e-25 119.0 153 46.4
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 4.9e-25 118.6 121 52.1
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.7e-22 110.2 171 39.8
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 2.8e-20 102.8 170 38.2
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 6.4e-17 91.7 106 49.1
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 1.9e-16 90.1 156 36.5
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 7.1e-16 88.2 132 40.9
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 2.1e-15 86.7 173 35.3
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.4e-11 73.9 158 32.9
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 4.0e-11 72.4 149 31.5
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 4.5e-10 68.9 48 62.5
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 3.9e-06 55.8 43 60.5


User provided reference genes

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