Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 0.0e+00 1137.5 574 100.0
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 0.0e+00 1076.2 575 94.4
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 3.6e-308 1060.8 575 92.5
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.2e-305 1051.6 576 92.2
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.2e-279 966.1 604 81.5
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.7e-257 892.5 603 77.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 4.7e-255 884.4 479 93.9
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 4.0e-246 854.7 502 86.5
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 3.5e-234 815.1 575 69.9
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 4.7e-231 804.7 574 68.3
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 6.3e-228 794.3 575 68.9
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.0e-218 762.7 576 65.1
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 3.5e-218 761.9 578 65.2
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.1e-216 756.9 575 65.0
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.5e-216 756.5 575 64.9
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 4.3e-216 755.0 578 65.2
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 3.6e-215 751.9 575 64.9
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 8.0e-215 750.7 575 63.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 1.4e-214 750.0 574 64.6
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 3.1e-214 748.8 575 66.4
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.1e-214 748.8 575 65.6
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 5.2e-214 748.0 575 64.9
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 6.8e-214 747.7 576 63.2
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.0e-213 746.1 575 63.1
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.4e-213 745.3 576 64.6
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 5.8e-213 744.6 575 63.3
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 7.5e-213 744.2 576 64.6
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.5e-213 744.2 576 64.4
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.1e-211 740.3 575 63.0
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.9e-211 739.6 576 63.9
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 4.1e-211 738.4 575 63.1
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 3.0e-209 732.3 576 63.9
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 6.6e-209 731.1 575 63.1
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 8.6e-209 730.7 576 64.1
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 4.3e-208 728.4 576 61.8
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.3e-208 728.4 576 62.5
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 7.3e-208 727.6 576 63.2
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.1e-207 726.1 586 63.3
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 4.4e-205 718.4 575 61.7
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 7.5e-205 717.6 593 60.2
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.7e-204 716.5 575 61.7
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.2e-204 716.1 575 61.9
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 7.1e-203 711.1 574 61.0
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 7.1e-203 711.1 574 60.8
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 1.6e-202 709.9 570 60.7
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 2.1e-202 709.5 574 62.2
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.3e-201 706.8 578 59.7
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.3e-201 706.1 574 60.1
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 5.1e-201 704.9 575 60.3
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.9e-200 703.0 575 60.2
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.9e-200 703.0 574 61.7
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 1.6e-199 699.9 574 60.1
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 4.7e-199 698.4 572 60.5
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 8.1e-199 697.6 576 60.2
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 8.1e-199 697.6 576 61.3
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 8.1e-199 697.6 577 58.8
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.8e-198 696.4 575 60.0
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.5e-197 693.3 574 61.3
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.4e-197 691.8 576 60.4
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 5.8e-197 691.4 575 61.6
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 7.6e-197 691.0 567 60.0
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 9.9e-197 690.6 577 60.0
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.3e-196 690.3 603 56.6
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.9e-196 689.1 575 60.0
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.1e-195 687.2 577 59.6
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.4e-195 686.8 575 59.3
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.6e-191 673.3 575 57.9
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 4.4e-189 665.2 645 55.5
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 9.9e-189 664.1 578 58.3
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.7e-188 663.3 578 58.0
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.2e-186 657.1 578 57.6
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 4.6e-186 655.2 578 57.6
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 5.1e-185 651.7 577 57.7
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 6.6e-185 651.4 574 57.0
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 9.6e-184 647.5 517 62.5
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 7.6e-181 637.9 578 56.9
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 6.4e-180 634.8 578 56.2
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.4e-179 633.6 578 54.8
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 3.5e-178 629.0 532 59.6
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.6e-175 620.2 577 56.0
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.6e-175 620.2 577 56.0
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.6e-175 620.2 552 58.2
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.4e-174 616.3 577 53.7
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 6.4e-172 608.2 574 55.1
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.1e-171 607.4 516 57.8
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 4.2e-171 605.5 574 54.7
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 4.2e-171 605.5 574 54.7
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 9.3e-171 604.4 553 56.1
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 4.3e-168 595.5 680 48.1
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.8e-167 592.8 497 60.6
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.2e-165 587.4 575 52.3
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.3e-161 573.2 429 65.7
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.6e-159 567.0 548 53.3
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.8e-159 566.2 442 63.3
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.4e-150 537.3 393 67.2
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 6.5e-148 528.5 429 61.8
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.4e-142 510.0 398 62.8
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.2e-139 499.2 554 47.5
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 3.6e-138 496.1 498 55.2
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.6e-133 479.9 581 45.8
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.2e-124 450.3 461 51.8
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.2e-123 446.0 367 61.9
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 4.7e-122 442.6 468 51.5
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 5.7e-120 435.6 601 39.3
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 5.4e-118 429.1 356 61.2
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 5.9e-109 399.1 598 38.1
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 4.3e-107 392.9 580 40.5
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.7e-103 379.8 297 61.6
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.3e-103 378.6 474 46.8
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 1.9e-67 261.2 244 54.9
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 1.8e-65 254.6 297 47.8
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.6e-58 231.5 385 39.5
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 2.8e-58 230.7 208 58.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 2.5e-51 207.6 527 28.1
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 4.5e-48 196.8 160 60.6
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 2.8e-34 151.0 74 95.9
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 8.2e-34 149.4 99 65.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 5.3e-33 146.7 464 25.0
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 6.9e-33 146.4 170 50.6
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 1.5e-32 145.2 442 26.7
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.9e-31 141.0 152 51.3
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 5.1e-28 130.2 121 49.6
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.0e-27 128.3 387 25.6
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 1.7e-26 125.2 224 38.4
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 6.9e-25 119.8 130 46.9
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.2e-24 119.0 113 55.8
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.2e-24 119.0 113 55.8
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 7.4e-19 99.8 73 69.9
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.8e-18 97.8 77 61.0
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 3.7e-18 97.4 89 53.9
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.6e-16 92.0 77 59.7
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 5.9e-16 90.1 52 78.8
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.9e-15 87.8 261 27.6
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-14 84.3 68 55.9
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.8e-09 68.6 45 68.9
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.9e-08 63.5 51 54.9
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 4.2e-06 57.4 58 51.7


User provided reference genes

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