Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 8.3e-115 417.2 225 100.0
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 2.0e-100 369.4 224 89.7
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 3.4e-100 368.6 224 89.7
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 1.9e-95 352.8 224 87.1
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 6.2e-94 347.8 226 80.5
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.2e-91 339.3 229 83.8
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 1.9e-90 336.3 224 85.3
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 5.4e-90 334.7 196 87.8
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.6e-70 268.9 192 72.4
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 4.7e-70 268.5 191 72.3
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 1.8e-69 266.5 194 69.6
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 5.8e-68 261.5 207 63.8
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 7.1e-66 254.6 198 66.2
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 1.6e-65 253.4 202 60.9
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 1.3e-64 250.4 212 61.8
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.3e-64 250.4 212 61.8
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.3e-64 250.4 233 58.4
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 2.3e-64 249.6 178 70.2
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 3.0e-64 249.2 177 70.1
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 1.5e-63 246.9 233 56.7
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 1.5e-63 246.9 182 68.1
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.9e-63 246.5 181 65.2
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 1.9e-63 246.5 202 62.4
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 4.3e-63 245.4 195 64.6
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 7.3e-63 244.6 228 56.6
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 9.6e-63 244.2 188 63.3
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 1.3e-62 243.8 184 65.8
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 2.1e-62 243.0 208 59.1
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 2.8e-62 242.7 192 64.1
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 6.2e-62 241.5 188 62.2
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 8.1e-62 241.1 209 59.8
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 1.1e-61 240.7 193 61.1
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.4e-61 240.4 175 67.4
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 3.1e-61 239.2 208 59.1
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 3.1e-61 239.2 195 60.0
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 4.0e-61 238.8 208 59.1
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 5.3e-61 238.4 178 66.3
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 6.9e-61 238.0 200 61.0
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 9.0e-61 237.7 211 56.4
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 9.0e-61 237.7 205 58.0
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 2.0e-60 236.5 178 63.5
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 2.0e-60 236.5 189 61.4
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 2.0e-60 236.5 199 60.3
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 2.0e-60 236.5 181 65.7
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 3.4e-60 235.7 205 58.5
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 3.4e-60 235.7 203 58.6
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 4.4e-60 235.3 190 63.2
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.8e-60 235.0 205 58.5
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 1.3e-59 233.8 216 56.9
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 1.7e-59 233.4 195 60.5
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 2.2e-59 233.0 227 55.5
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 2.9e-59 232.6 189 61.9
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 2.9e-59 232.6 196 60.2
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 3.8e-59 232.3 203 62.6
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 6.4e-59 231.5 206 57.8
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 8.4e-59 231.1 212 55.2
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 1.4e-58 230.3 188 61.7
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 1.9e-58 229.9 186 62.9
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 2.4e-58 229.6 213 56.3
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 2.4e-58 229.6 186 61.8
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 2.4e-58 229.6 190 62.6
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 3.2e-58 229.2 224 55.4
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 4.2e-58 228.8 202 59.9
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 7.1e-58 228.0 185 62.2
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.2e-57 227.3 191 61.3
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 1.2e-57 227.3 206 55.3
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 3.5e-57 225.7 213 56.3
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 3.5e-57 225.7 217 56.7
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 3.5e-57 225.7 204 57.4
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 4.6e-57 225.3 183 60.7
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 6.0e-57 224.9 189 62.4
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 6.0e-57 224.9 178 63.5
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 7.9e-57 224.6 199 59.3
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 7.9e-57 224.6 209 55.5
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 1.0e-56 224.2 184 59.8
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 1.3e-56 223.8 217 54.4
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 1.7e-56 223.4 197 57.9
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 1.7e-56 223.4 206 56.3
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 3.0e-56 222.6 184 59.2
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 3.9e-56 222.2 182 60.4
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 3.9e-56 222.2 189 57.1
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 6.6e-56 221.5 212 53.8
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 1.5e-55 220.3 180 63.3
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 1.5e-55 220.3 197 56.3
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 1.5e-55 220.3 209 56.9
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 7.4e-55 218.0 210 56.7
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 2.1e-54 216.5 206 55.3
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 2.8e-54 216.1 184 61.4
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 4.8e-54 215.3 207 56.5
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 8.1e-54 214.5 211 54.0
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 1.1e-53 214.2 211 54.0
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 3.1e-53 212.6 202 53.0
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 1.5e-52 210.3 197 55.8
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 2.6e-52 209.5 188 55.3
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 7.6e-52 208.0 215 52.6
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 4.9e-51 205.3 181 56.4
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 1.1e-50 204.1 212 52.8
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 1.1e-50 204.1 212 52.8
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 3.2e-50 202.6 212 52.4
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 7.1e-50 201.4 223 48.4
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 1.6e-49 200.3 201 53.7
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 7.9e-49 198.0 171 57.3
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 3.1e-45 186.0 150 58.0
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 1.7e-43 180.3 158 53.8
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 1.1e-42 177.6 114 67.5
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 3.5e-41 172.6 101 80.2
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 5.7e-39 165.2 180 47.2
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 3.4e-36 156.0 155 56.8
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 6.9e-29 131.7 178 41.6
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 4.5e-28 129.0 179 40.8
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 4.2e-26 122.5 223 35.0
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.7e-25 119.8 173 40.5
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.9e-24 115.9 130 49.2
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 7.4e-23 111.7 124 44.4
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.3e-19 100.9 175 36.0
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 2.9e-19 99.8 183 35.0
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 1.9e-18 97.1 131 46.6
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 5.1e-16 89.0 139 41.0
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 2.9e-11 73.2 41 80.5


User provided reference genes

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