Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 5.0e-157 557.8 289 100.0
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 3.7e-152 541.6 289 96.9
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 6.0e-150 534.3 289 95.8
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 3.0e-149 531.9 291 94.8
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 6.4e-144 514.2 289 91.3
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 2.4e-106 389.4 280 73.2
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.4e-103 380.2 274 72.6
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 2.5e-103 379.4 276 68.5
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 3.2e-103 379.0 276 70.3
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 3.2e-103 379.0 289 69.2
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 1.6e-102 376.7 273 68.9
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 2.1e-102 376.3 289 68.9
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 7.9e-102 374.4 273 68.9
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 7.9e-102 374.4 210 90.0
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.8e-101 373.2 276 69.2
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 2.3e-101 372.9 271 69.7
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 3.9e-101 372.1 274 69.3
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 1.9e-100 369.8 277 68.2
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 2.5e-100 369.4 282 68.8
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 3.3e-100 369.0 286 66.1
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 3.3e-100 369.0 268 69.4
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 5.6e-100 368.2 280 66.8
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 5.6e-100 368.2 287 66.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 7.4e-100 367.9 273 67.0
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 7.4e-100 367.9 273 67.0
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 9.6e-100 367.5 274 65.3
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 9.6e-100 367.5 275 66.2
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.3e-99 367.1 272 68.8
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 2.1e-99 366.3 285 66.3
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 3.7e-99 365.5 293 66.6
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 3.7e-99 365.5 291 66.0
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 8.2e-99 364.4 275 66.2
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 8.2e-99 364.4 275 67.3
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 1.1e-98 364.0 275 66.5
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 1.8e-98 363.2 299 66.2
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.8e-98 363.2 273 67.0
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.4e-98 362.8 276 65.6
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 3.1e-98 362.5 277 67.5
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 3.1e-98 362.5 284 65.5
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 6.9e-98 361.3 274 66.4
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 3.4e-97 359.0 276 64.5
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 5.8e-97 358.2 271 66.4
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 4.6e-94 348.6 271 65.7
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.3e-93 347.1 320 59.7
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 1.3e-93 347.1 290 61.4
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.8e-93 346.7 320 59.4
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 2.3e-93 346.3 271 64.9
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 9.7e-92 340.9 330 54.5
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 9.7e-92 340.9 265 63.8
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 1.6e-91 340.1 293 62.8
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 4.8e-91 338.6 268 63.1
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 6.3e-91 338.2 279 64.2
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 6.3e-91 338.2 268 63.8
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 1.1e-90 337.4 284 62.3
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.4e-90 337.0 275 61.1
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 5.3e-90 335.1 273 61.5
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 6.9e-90 334.7 281 60.9
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 4.5e-89 332.0 285 59.6
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 5.9e-89 331.6 270 62.6
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 7.7e-89 331.3 284 62.0
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.0e-88 330.9 270 61.9
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 3.8e-88 328.9 273 60.8
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 6.5e-88 328.2 301 58.8
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 1.4e-87 327.0 273 61.5
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 1.9e-87 326.6 295 59.0
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 4.2e-87 325.5 268 62.3
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 7.2e-87 324.7 273 59.7
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.2e-86 323.9 273 61.2
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.2e-86 323.9 273 61.2
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 2.7e-86 322.8 276 63.0
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 3.6e-86 322.4 287 57.5
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 3.0e-85 319.3 273 60.1
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 5.1e-85 318.5 273 60.1
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 1.5e-84 317.0 280 57.9
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.0e-84 316.6 273 59.7
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 1.8e-82 310.1 256 63.7
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 4.1e-82 308.9 249 64.7
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 3.4e-81 305.8 235 68.9
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 3.4e-81 305.8 278 61.9
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 1.1e-79 300.8 209 70.8
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 3.3e-76 289.3 209 65.6
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 4.4e-76 288.9 273 56.0
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.7e-75 287.0 234 61.5
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 1.4e-74 283.9 230 59.1
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.8e-74 283.5 289 55.4
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 3.1e-74 282.7 214 65.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 7.0e-74 281.6 237 59.9
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 9.1e-74 281.2 197 70.1
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 2.1e-70 270.0 263 54.4
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 4.4e-68 262.3 226 58.4
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.3e-64 250.8 133 95.5
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 3.6e-62 242.7 221 61.1
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 3.0e-61 239.6 176 69.3
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 2.2e-59 233.4 216 61.1
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.4e-58 229.9 145 85.5
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 7.0e-58 228.4 190 61.6
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.2e-57 227.6 166 71.1
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.4e-53 214.2 183 63.4
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 1.5e-52 210.7 164 69.5
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.9e-48 196.4 219 49.8
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 7.2e-47 191.8 173 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 3.6e-46 189.5 176 57.4
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 1.2e-44 184.5 305 38.4
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.0e-40 171.4 239 44.8
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.3e-39 166.4 143 59.4
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 1.3e-35 154.5 100 74.0
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 4.1e-34 149.4 100 74.0
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 7.0e-34 148.7 126 58.7
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 1.5e-28 131.0 107 61.7
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 2.0e-28 130.6 104 63.5
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 8.3e-27 125.2 108 60.2
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-26 124.8 97 61.9
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 5.4e-26 122.5 88 65.9
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 1.7e-24 117.5 100 60.0
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 4.7e-22 109.4 102 57.8
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 4.9e-19 99.4 233 30.9
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 6.4e-19 99.0 150 45.3
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 7.1e-18 95.5 89 57.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.7e-16 90.9 84 52.4
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-15 87.8 96 50.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.1e-14 84.0 68 61.8
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 4.7e-14 82.8 65 64.6
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 8.1e-14 82.0 65 67.7
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 6.8e-13 79.0 47 76.6
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 8.9e-13 78.6 55 69.1


User provided reference genes

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