Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 3.8e-105 384.8 188 100.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.6e-79 299.7 145 99.3
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 5.2e-78 294.7 156 94.2
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.6e-74 283.1 158 88.6
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-69 265.0 162 83.3
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 9.1e-67 257.3 151 82.8
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.5e-61 240.0 147 80.3
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.2e-60 236.1 162 70.4
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 6.3e-60 234.6 151 76.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.4e-59 233.4 156 76.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.4e-59 233.4 151 76.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.8e-59 233.0 151 73.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.9e-57 225.7 151 73.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.9e-57 225.7 153 73.9
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.8e-57 225.3 153 75.2
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 8.6e-57 224.2 153 70.6
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.5e-56 223.4 158 69.0
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 3.3e-56 222.2 151 70.9
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.3e-56 222.2 164 69.5
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.5e-56 220.7 153 69.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-55 220.3 162 67.3
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.2e-55 220.3 151 69.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 4.7e-55 218.4 155 69.7
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 8.0e-55 217.6 153 67.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.4e-54 216.9 154 68.2
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.4e-54 216.9 154 68.2
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.0e-54 215.3 153 69.3
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 8.9e-54 214.2 164 64.6
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.0e-53 213.0 153 66.7
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.6e-53 212.6 163 65.0
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 7.5e-53 211.1 164 64.6
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.7e-52 209.9 154 68.8
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.2e-52 209.5 153 68.6
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.9e-52 209.1 164 64.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.9e-52 209.1 153 65.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.9e-52 209.1 153 66.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.9e-52 209.1 156 66.7
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 4.9e-52 208.4 153 66.7
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.9e-52 208.4 154 65.6
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.9e-52 208.4 164 61.6
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 6.4e-52 208.0 151 68.2
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 6.4e-52 208.0 151 68.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-51 207.2 153 66.0
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.8e-51 206.5 164 61.0
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.8e-51 206.5 153 66.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.4e-51 206.1 172 61.6
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.4e-51 206.1 156 64.7
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 4.1e-51 205.3 164 64.0
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.4e-51 204.9 153 66.0
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.4e-51 204.9 166 62.0
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.4e-51 204.9 166 61.4
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.4e-51 204.9 150 65.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 7.0e-51 204.5 149 66.4
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 7.0e-51 204.5 164 61.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 7.0e-51 204.5 153 64.7
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.2e-50 203.8 149 67.1
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.0e-50 203.0 164 61.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.5e-50 202.2 150 64.7
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.5e-50 202.2 150 64.7
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 7.8e-50 201.1 166 60.8
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.8e-50 201.1 166 60.8
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 7.8e-50 201.1 166 60.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.0e-49 200.7 166 61.4
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.3e-49 200.3 166 61.4
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.3e-49 200.3 166 61.4
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 2.3e-49 199.5 151 64.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.3e-49 199.5 207 53.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.0e-49 199.1 153 64.1
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.0e-49 199.1 154 63.6
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 3.9e-49 198.7 153 62.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.9e-49 198.7 167 60.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 3.9e-49 198.7 149 67.1
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 6.6e-49 198.0 167 59.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 8.6e-49 197.6 164 61.6
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.1e-48 197.2 185 56.8
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.1e-48 197.2 167 60.5
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.1e-48 197.2 154 66.2
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.1e-48 197.2 164 61.6
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.1e-48 197.2 149 61.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.9e-48 196.4 163 60.1
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.5e-48 196.1 154 63.6
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.3e-48 195.3 154 64.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.6e-48 194.9 144 63.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 7.3e-48 194.5 154 63.6
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 9.5e-48 194.1 198 53.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.6e-47 193.4 147 63.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 3.6e-47 192.2 154 61.7
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.4e-46 190.3 154 63.0
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 2.3e-46 189.5 164 57.9
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.3e-46 189.5 154 61.7
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.0e-46 188.7 152 60.5
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.2e-46 188.3 176 56.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.2e-46 188.3 176 56.8
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-45 187.2 151 60.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.0e-45 186.4 152 63.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 9.8e-45 184.1 162 56.8
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 6.4e-44 181.4 155 59.4
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-43 180.6 108 85.2
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.2e-43 179.1 156 59.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.7e-42 176.0 128 65.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.4e-38 163.7 138 58.0
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.3e-38 162.9 122 65.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 5.2e-38 161.8 138 57.2
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.4e-37 159.1 147 55.8
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 5.8e-37 158.3 164 53.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 5.8e-37 158.3 178 48.9
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 7.5e-37 157.9 164 49.4
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 7.1e-35 151.4 148 56.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 9.2e-35 151.0 92 71.7
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.2e-35 151.0 153 51.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.1e-34 149.8 160 53.1
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.1e-34 149.8 89 74.2
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.5e-34 149.1 160 51.9
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.3e-33 147.1 155 52.3
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.7e-33 146.7 92 71.7
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.1e-33 145.2 110 68.2
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.3e-32 142.1 156 50.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.6e-32 141.7 160 51.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.6e-31 140.2 156 49.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.1e-30 136.0 104 63.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.2e-30 135.2 158 48.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-28 130.6 109 57.8
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.9e-28 129.4 124 58.9
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.1e-24 117.5 149 44.3
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 4.3e-24 115.5 78 71.8
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.1e-23 113.2 151 45.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 6.2e-23 111.7 144 46.5
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.0e-22 109.0 155 43.2
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.5e-21 107.1 149 43.0
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.5e-21 107.1 136 46.3
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.6e-21 104.8 153 39.9
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.4e-19 100.5 154 36.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.1e-18 96.7 146 35.6
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.5e-18 95.9 133 40.6
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 5.1e-17 92.0 55 76.4
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.9e-12 75.5 94 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.4e-12 75.1 80 48.8
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.4e-12 75.1 54 63.0
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 8.4e-12 74.7 125 40.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.1e-11 74.3 73 49.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 7.1e-11 71.6 120 35.8
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.6e-10 70.5 162 29.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-09 67.4 91 35.2
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.5e-08 63.2 129 32.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 7.4e-08 61.6 141 32.6
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.7e-07 59.3 158 26.6


User provided reference genes

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