Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024540 Solanum tuberosum HOM05D004083 ORTHO05D005029 1.6e-115 419.5 219 100.0
Sopen03g034190 Solanum pennellii HOM05D004083 ORTHO05D005029 9.9e-73 277.3 373 49.6
Solyc03g115120.1 Solanum lycopersicum HOM05D004083 ORTHO05D005029 2.4e-71 272.7 371 49.1
PGSC0003DMG400024541 Solanum tuberosum HOM05D004083 ORTHO05D005029 1.1e-50 204.1 209 60.3
Solyc03g115140.4 Solanum lycopersicum HOM05D004083 ORTHO05D005029 2.6e-49 199.5 209 59.8
Sopen03g034200 Solanum pennellii HOM05D004083 ORTHO05D005029 1.9e-47 193.4 209 58.4
CAN.G1228.28 Capsicum annuum HOM05D004083 ORTHO05D000105 4.2e-47 192.2 176 62.5
Oeu014402.1 Olea europaea HOM05D004083 ORTHO05D005029 1.4e-45 187.2 172 59.9
ECA232G3573 Erigeron canadensis HOM05D004083 ORTHO05D005029 1.8e-45 186.8 172 61.6
MELO3C017222.2 Cucumis melo HOM05D004083 ORTHO05D005029 3.9e-45 185.7 165 61.8
Dinv22784 Davidia involucrata HOM05D004083 ORTHO05D005029 2.0e-44 183.3 177 60.5
Sabra09G0010400 Salix brachista HOM05D004083 ORTHO05D005029 2.6e-44 183.0 181 58.6
Oeu042728.1 Olea europaea HOM05D004083 ORTHO05D005029 3.3e-44 182.6 172 59.9
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 9.7e-44 181.0 177 59.3
Potri.009G018400 Populus trichocarpa HOM05D004083 ORTHO05D005029 1.3e-43 180.6 178 59.6
Migut.D01668 Erythranthe guttata HOM05D004083 ORTHO05D005029 1.7e-43 180.3 172 60.5
MSTRG.9600 Avicennia marina HOM05D004083 ORTHO05D005029 2.8e-43 179.5 205 55.6
Lsat_1_v5_gn_5_22480 Lactuca sativa HOM05D004083 ORTHO05D005029 3.7e-43 179.1 205 55.1
Rhsim08G0146200 Rhododendron simsii HOM05D004083 ORTHO05D005029 3.7e-43 179.1 180 57.8
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 4.8e-43 178.7 178 58.4
TAR264G0004 Trochodendron aralioides HOM05D004083 ORTHO05D005029 6.3e-43 178.3 206 52.9
Lj5C102T12 Lonicera japonica HOM05D004083 ORTHO05D005029 1.1e-42 177.6 182 56.0
Lsat_1_v5_gn_4_111021 Lactuca sativa HOM05D004083 ORTHO05D005029 2.4e-42 176.4 172 58.7
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 4.1e-42 175.6 178 55.6
Duzib205G0149 Durio zibethinus HOM05D004083 ORTHO05D005029 5.3e-42 175.3 172 58.1
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 9.1e-42 174.5 177 54.8
CsaV3_1G002890 Cucumis sativus L. HOM05D004083 ORTHO05D005029 9.1e-42 174.5 164 58.5
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 1.5e-41 173.7 179 57.5
Ciclev10019373m.g Citrus clementina HOM05D004083 ORTHO05D005029 2.0e-41 173.3 177 55.4
Ah.11g047840 Amaranthus hybridus HOM05D004083 ORTHO05D005029 3.4e-41 172.6 172 57.6
vmacro17608 Vaccinium macrocarpon HOM05D004083 ORTHO05D005029 3.4e-41 172.6 176 56.8
Gohir.D12G185400 Gossypium hirsutum HOM05D004083 ORTHO05D005029 4.5e-41 172.2 172 58.1
Gorai.008G198800 Gossypium raimondii HOM05D004083 ORTHO05D005029 4.5e-41 172.2 172 58.1
CDE04G1128 Ceratophyllum demersum HOM05D004083 ORTHO05D005029 2.2e-40 169.9 167 58.7
DCAR_023173 Daucus carota HOM05D004083 ORTHO05D005029 2.2e-40 169.9 172 58.7
FAN08G2807 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.2e-40 169.9 172 55.8
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 2.9e-40 169.5 178 55.1
Gohir.A12G182366 Gossypium hirsutum HOM05D004083 ORTHO05D005029 2.9e-40 169.5 172 57.6
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 6.5e-40 168.3 167 57.5
Sp5g29430 Schrenkiella parvula HOM05D004083 ORTHO05D005029 6.5e-40 168.3 178 55.1
SalBow2G0571 Salvia bowleyana HOM05D004083 ORTHO05D005029 1.1e-39 167.5 172 56.4
Atru.chr9.431 Acer truncatum HOM05D004083 ORTHO05D005029 1.9e-39 166.8 172 55.2
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 3.2e-39 166.0 181 54.7
Eucgr.B00587 Eucalyptus grandis HOM05D004083 ORTHO05D005029 4.2e-39 165.6 176 56.2
FAN13G2878 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.2e-39 165.6 172 55.2
Cpa.g.sc94.53 Carica papaya HOM05D004083 ORTHO05D005029 5.5e-39 165.2 175 56.6
Ca_21778_v3 Cicer arietinum L. HOM05D004083 ORTHO05D005029 5.5e-39 165.2 174 55.7
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 5.5e-39 165.2 164 55.5
SalBow7G3022 Salvia bowleyana HOM05D004083 ORTHO05D005029 7.2e-39 164.9 174 55.7
SGA_v2.0_scaffold42G16038 Striga asiatica HOM05D004083 ORTHO05D005029 7.2e-39 164.9 173 56.6
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 9.4e-39 164.5 178 53.4
FvH4_5g13920 Fragaria vesca HOM05D004083 ORTHO05D005029 1.2e-38 164.1 172 54.1
MBI19_g37728_MAGBIO Magnolia biondii HOM05D004083 ORTHO05D005029 2.1e-38 163.3 177 55.4
RcHm_v2.0_Chr7g0183041 Rosa chinensis HOM05D004083 ORTHO05D005029 3.6e-38 162.5 172 54.7
EL10Ac5g11124 Beta vulgaris HOM05D004083 ORTHO05D005029 6.1e-38 161.8 180 52.8
QL10p019423 Quercus lobata HOM05D004083 ORTHO05D005029 1.4e-37 160.6 188 52.7
THA.LOC104812102 Tarenaya hassleriana HOM05D004083 ORTHO05D005029 1.4e-37 160.6 170 53.5
HPP92_009477 Vanilla planifolia HOM05D004083 ORTHO05D005029 1.4e-37 160.6 175 53.1
ClCG06G015670 Citrullus lanatus HOM05D004083 ORTHO05D005029 1.8e-37 160.2 164 56.1
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 1.8e-37 160.2 172 55.2
HanXRQChr16g0502431 Helianthus annuus HOM05D004083 ORTHO05D005029 1.8e-37 160.2 172 54.1
SEGI_38744 Sequoiadendron giganteum HOM05D004083 ORTHO05D005029 1.8e-37 160.2 167 52.1
FAN18G2285 Fragaria x ananassa HOM05D004083 ORTHO05D005029 2.3e-37 159.8 173 53.8
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 1.1e-36 157.5 188 50.0
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 2.6e-36 156.4 172 53.5
Cfa019327 Carpinus fangiana HOM05D004083 ORTHO05D005029 2.6e-36 156.4 174 54.6
Prupe.5G204600 Prunus persica HOM05D004083 ORTHO05D005029 3.3e-36 156.0 175 54.3
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 7.4e-36 154.8 172 51.7
MD06G1202400 Malus domestica HOM05D004083 ORTHO05D005029 7.4e-36 154.8 169 52.7
MD14G1211500 Malus domestica HOM05D004083 ORTHO05D005029 7.4e-36 154.8 167 53.3
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 1.3e-35 154.1 166 53.0
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 8.2e-35 151.4 174 51.1
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 8.2e-35 151.4 177 50.8
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 1.4e-34 150.6 176 50.0
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 2.4e-34 149.8 164 51.8
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 2.4e-34 149.8 167 52.7
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 4.1e-34 149.1 159 54.7
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 4.1e-34 149.1 174 50.6
AUR62008522 Chenopodium quinoa HOM05D004083 ORTHO05D005029 4.1e-34 149.1 180 48.3
Peaxi162Scf00201g00248 Petunia axillaris HOM05D004083 ORTHO05D005029 4.1e-34 149.1 141 63.8
Sc04g0004330 Simmondsia chinensis HOM05D004083 ORTHO05D005029 5.3e-34 148.7 182 48.9
Nitab4.5_0012564g0020 Nicotiana tabacum HOM05D004083 ORTHO05D005029 7.0e-34 148.3 154 56.5
Nitab4.5_0001485g0130 Nicotiana tabacum HOM05D004083 ORTHO05D005029 9.1e-34 147.9 153 57.5
Medtr4g109510 Medicago truncatula HOM05D004083 ORTHO05D005029 5.9e-33 145.2 154 51.9
Nn3g17443 Nelumbo nucifera HOM05D004083 ORTHO05D005029 7.7e-33 144.8 155 54.2
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 1.0e-32 144.4 167 50.9
Hma1.2p1_0060F.1_g033140 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.3e-32 144.1 177 49.7
Hma1.2p1_0060F.1_g033150 Hydrangea macrophylla HOM05D004083 ORTHO05D005029 1.3e-32 144.1 177 49.7
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 1.3e-32 144.1 168 50.6
TWI15G0273 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.7e-32 143.7 180 50.6
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 2.9e-32 142.9 163 53.4
Zm00001eb409280 Zea mays HOM05D004083 ORTHO05D005029 5.0e-32 142.1 174 48.3
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 1.9e-31 140.2 161 49.7
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 7.2e-31 138.3 164 50.0
Cc00_g07590 Coffea canephora HOM05D004083 ORTHO05D005029 1.2e-30 137.5 176 49.4
PSO478G3647 Papaver somniferum HOM05D004083 ORTHO05D005029 1.2e-30 137.5 165 46.7
PSO017G0790 Papaver somniferum HOM05D004083 ORTHO05D005029 2.7e-30 136.3 166 46.4
Thhalv10018249m.g Eutrema salsugineum HOM05D004083 ORTHO05D005029 6.1e-30 135.2 159 49.1
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 8.0e-30 134.8 164 50.0
PGR083G0930 Punica granatum HOM05D004083 ORTHO05D005029 1.8e-29 133.7 181 48.6
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 2.3e-29 133.3 167 46.1
A07p29490 Brassica napus HOM05D004083 ORTHO05D005029 3.0e-29 132.9 166 47.0
Lalb_Chr12g0197191 Lupinus albus HOM05D004083 ORTHO05D005029 5.2e-29 132.1 161 49.7
C06p33480 Brassica napus HOM05D004083 ORTHO05D005029 3.3e-28 129.4 170 44.7
BolC6t38462H Brassica oleracea HOM05D004083 ORTHO05D005029 3.3e-28 129.4 170 44.7
Hund02589 Selenicereus undatus HOM05D004083 ORTHO05D005029 4.4e-28 129.0 154 51.3
BcaC08g45598 Brassica carinata HOM05D004083 ORTHO05D005029 5.7e-28 128.6 197 43.1
BcaC08g46857 Brassica carinata HOM05D004083 ORTHO05D005029 1.3e-27 127.5 157 48.4
BraA07t30587Z Brassica rapa HOM05D004083 ORTHO05D005029 1.3e-27 127.5 165 46.7
CBR_g40972 Chara braunii HOM05D004083 ORTHO05D005029 1.3e-27 127.5 205 39.5
Zm00001eb409350 Zea mays HOM05D004083 ORTHO05D005029 1.7e-27 127.1 174 48.9
Zm00001eb409390 Zea mays HOM05D004083 ORTHO05D005029 2.2e-27 126.7 172 47.1
Zm00001eb409300 Zea mays HOM05D004083 ORTHO05D005029 4.8e-27 125.6 174 48.3
Mapoly0088s0065 Marchantia polymorpha HOM05D004083 ORTHO05D005029 1.1e-26 124.4 191 38.7
Os12g0502700 Oryza sativa ssp. japonica HOM05D004083 ORTHO05D005029 7.0e-26 121.7 175 44.0
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 4.5e-25 119.0 164 46.3
FvH4_5g13880 Fragaria vesca HOM05D004083 ORTHO05D005029 3.2e-23 112.8 166 45.2
MCO13G099 Micromonas commoda HOM05D004083 ORTHO05D005029 4.2e-23 112.5 169 42.6
AagrBONN_evm.TU.Sc2ySwM_228.3286 Anthoceros agrestis HOM05D004083 ORTHO05D005029 1.2e-22 110.9 188 39.4
RcHm_v2.0_Chr7g0183051 Rosa chinensis HOM05D004083 ORTHO05D005029 4.7e-22 109.0 168 44.6
FvH4_5g00881 Fragaria vesca HOM05D004083 ORTHO05D005029 1.4e-21 107.5 165 43.6
FAN18G2457 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.4e-21 107.5 165 43.6
FAN04G0828 Fragaria x ananassa HOM05D004083 ORTHO05D005029 5.2e-21 105.5 165 42.4
unitig_748.g8703 Utricularia gibba HOM05D004083 ORTHO05D005029 2.0e-20 103.6 162 43.8
RcHm_v2.0_Chr7g0200511 Rosa chinensis HOM05D004083 ORTHO05D005029 2.8e-19 99.8 166 43.4
AUR62021567 Chenopodium quinoa HOM05D004083 ORTHO05D005029 4.8e-19 99.0 80 61.2
FvH4_4g18280 Fragaria vesca HOM05D004083 ORTHO05D005029 4.8e-19 99.0 172 42.4
FAN12G2651 Fragaria x ananassa HOM05D004083 ORTHO05D005029 4.8e-19 99.0 172 42.4
Actinidia05940 Actinidia chinensis HOM05D004083 ORTHO05D005029 4.5e-17 92.4 71 63.4
Pp3c5_3270 Physcomitrium patens HOM05D004083 ORTHO05D005029 2.9e-16 89.7 184 36.4
RcHm_v2.0_Chr7g0200711 Rosa chinensis HOM05D004083 ORTHO05D005029 2.5e-15 86.7 166 39.2
Actinidia00358 Actinidia chinensis HOM05D004083 ORTHO05D005029 5.5e-15 85.5 172 39.5
Thecc.03G101200 Theobroma cacao HOM05D004083 ORTHO05D005029 9.5e-15 84.7 97 52.6
Cfa025727 Carpinus fangiana HOM05D004083 ORTHO05D005029 5.2e-13 79.0 164 34.8
FAN24G2149 Fragaria x ananassa HOM05D004083 ORTHO05D005029 1.2e-12 77.8 146 36.3
Actinidia16125 Actinidia chinensis HOM05D004083 ORTHO05D005029 2.0e-12 77.0 99 52.5
PRCOL_00006068 Prasinoderma coloniale HOM05D004083 ORTHO05D005029 7.5e-12 75.1 201 35.3
Cre05.g240650 Chlamydomonas reinhardtii HOM05D004083 ORTHO05D005029 1.8e-10 70.5 175 34.9
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 6.6e-08 62.0 52 57.7
ECA240G2921 Erigeron canadensis HOM05D002285 ORTHO05D004192 5.6e-07 58.9 83 39.8
TWI56G0106 Tripterygium wilfordii HOM05D004083 ORTHO05D005029 1.2e-06 57.8 208 28.4
SMO367G0595 Selaginella moellendorffii HOM05D002285 ORTHO05D004192 2.8e-06 56.6 73 41.1
PSO675G1354 Papaver somniferum HOM05D002285 ORTHO05D004192 4.7e-06 55.8 78 35.9
SHI32030 Sapria himalayana HOM05D004083 ORTHO05D005029 4.7e-06 55.8 125 40.8
AagrBONN_evm.TU.Sc2ySwM_228.101 Anthoceros agrestis HOM05D002285 ORTHO05D004192 6.1e-06 55.5 84 40.5
CDE08G0904 Ceratophyllum demersum HOM05D002285 ORTHO05D004192 6.1e-06 55.5 73 39.7
HanXRQChr03g0084781 Helianthus annuus HOM05D002285 ORTHO05D004192 6.1e-06 55.5 88 35.2
PSO541G2672 Papaver somniferum HOM05D002285 ORTHO05D004192 6.1e-06 55.5 71 38.0
ECA246G3634 Erigeron canadensis HOM05D002285 ORTHO05D004192 8.0e-06 55.1 87 37.9
vmacro09396 Vaccinium macrocarpon HOM05D002285 ORTHO05D004192 8.0e-06 55.1 83 36.1


User provided reference genes

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