Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 1.4e-23 112.1 55 100.0
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 5.5e-20 100.1 55 87.3
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 2.3e-18 94.7 55 81.8
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 6.7e-18 93.2 55 80.0
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 6.7e-18 93.2 55 80.0
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 3.3e-17 90.9 55 78.2
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 5.7e-17 90.1 55 74.5
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 9.6e-17 89.4 55 74.5
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 1.3e-16 89.0 55 74.5
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 74.5
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 72.7
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 74.5
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 76.4
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 76.4
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 76.4
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 74.5
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 2.8e-16 87.8 55 74.5
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 6.2e-16 86.7 55 72.7
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 65.5
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 74.5
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 70.9
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 72.7
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 3.1e-15 84.3 55 63.6
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 65.5
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 60.0
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 7.6e-14 79.7 55 61.8
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 7.6e-14 79.7 55 61.8
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 1.3e-13 79.0 53 62.3
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 1.3e-13 79.0 55 69.1
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 61.8
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 67.3
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 70.9
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 2.2e-13 78.2 53 64.2
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 3.8e-13 77.4 55 67.3
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 5.0e-13 77.0 55 61.8
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 60.0
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 61.8
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 61.8
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 61.8
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 60.0
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 60.0
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 61.8
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 63.6
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 8.4e-13 76.3 53 62.3
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 1.1e-12 75.9 55 67.3
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 1.1e-12 75.9 55 67.3
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 1.1e-12 75.9 55 61.8
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 58.2
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 58.2
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 65.5
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 65.5
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 63.6
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 1.9e-12 75.1 55 61.8
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 3.2e-12 74.3 55 67.3
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 5.5e-12 73.6 49 67.3
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 7.1e-12 73.2 49 69.4
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 7.1e-12 73.2 49 69.4
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 7.1e-12 73.2 55 61.8
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 9.3e-12 72.8 52 59.6
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 1.2e-11 72.4 55 56.4
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 2.1e-11 71.6 47 66.0
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 2.7e-11 71.2 55 60.0
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 2.7e-11 71.2 55 63.6
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 2.7e-11 71.2 49 65.3
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 3.5e-11 70.9 54 57.4
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 4.6e-11 70.5 55 60.0
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 2.3e-10 68.2 55 60.0
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 1.1e-09 65.9 55 56.4
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 1.5e-09 65.5 50 64.0
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 3.3e-09 64.3 52 57.7
Solyc03g150155.1 Solanum lycopersicum HOM05D035998 ORTHO05D010014 7.4e-09 63.2 29 93.1
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 1.6e-08 62.0 55 54.5
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 3.7e-08 60.8 48 56.2
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 1.1e-07 59.3 38 71.1
unitig_744.g24380 Utricularia gibba HOM05D007944 ORTHO05D010014 9.0e-07 56.2 83 42.2
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 5.9e-06 53.5 48 47.9
Actinidia18986 Actinidia chinensis HOM05D007944 ORTHO05D010014 1.0e-05 52.8 52 46.2
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 1.0e-05 52.8 49 46.9


User provided reference genes

Program Settings