Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 3.2e-163 578.6 337 100.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 9.4e-155 550.4 337 94.7
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.6e-154 549.7 337 93.2
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.8e-140 501.9 340 87.1
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.6e-138 495.4 339 87.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.0e-128 463.0 347 82.7
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.9e-116 422.5 439 63.1
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.2e-98 364.0 344 68.6
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.7e-87 327.0 343 64.7
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 1.7e-84 317.0 347 62.8
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.9e-83 313.5 342 56.7
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.4e-81 306.6 352 60.2
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.6e-80 303.1 321 62.9
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 4.4e-80 302.4 351 57.5
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 4.2e-78 295.8 348 58.9
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 2.1e-77 293.5 337 62.3
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.1e-77 293.5 341 57.2
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 6.0e-77 292.0 346 61.0
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 7.8e-77 291.6 336 57.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 3.9e-76 289.3 364 51.4
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 5.1e-76 288.9 349 57.6
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.6e-76 288.5 340 52.9
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.3e-74 284.3 340 56.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 4.8e-74 282.3 341 57.2
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.1e-73 279.6 343 60.6
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.3e-71 274.2 347 55.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-70 270.4 340 51.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.1e-70 268.5 346 51.7
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.1e-69 266.9 342 50.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.7e-69 266.5 251 67.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.0e-68 264.6 342 54.4
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 3.3e-67 259.6 344 56.7
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 5.6e-67 258.8 346 51.2
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 5.6e-67 258.8 346 50.6
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 3.6e-66 256.1 337 51.6
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.8e-65 253.8 347 50.4
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.8e-65 253.8 344 53.2
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 9.0e-65 251.5 344 52.3
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.5e-64 250.8 340 54.4
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.0e-64 250.4 340 54.7
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.6e-64 250.0 335 51.9
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.9e-63 246.5 347 53.0
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 3.8e-63 246.1 343 51.3
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.4e-63 245.4 346 50.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 8.4e-63 245.0 344 52.3
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.9e-62 243.8 333 57.4
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.9e-62 243.8 335 51.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 3.2e-62 243.0 340 50.0
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 3.2e-62 243.0 339 51.0
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 4.2e-62 242.7 376 46.0
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.5e-62 242.3 346 48.0
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 9.3e-62 241.5 301 51.8
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.6e-61 240.7 333 56.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.7e-61 240.0 349 54.4
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.5e-61 239.6 334 46.4
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.5e-61 239.6 337 52.2
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 6.0e-61 238.8 355 51.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.3e-60 236.9 333 55.6
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 8.7e-60 235.0 343 49.6
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.1e-59 234.6 333 54.4
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 4.3e-59 232.6 303 46.2
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 5.6e-59 232.3 343 44.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 5.6e-59 232.3 338 50.0
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 9.6e-59 231.5 350 47.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.8e-58 229.9 344 46.8
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 6.2e-58 228.8 345 50.7
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 8.1e-58 228.4 351 51.0
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 8.1e-58 228.4 304 46.1
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.4e-57 226.9 341 49.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 5.3e-57 225.7 336 52.1
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.2e-56 224.6 301 52.8
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.0e-56 223.8 334 53.0
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 7.6e-56 221.9 330 51.2
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.0e-55 221.5 513 41.5
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 3.8e-55 219.5 353 49.3
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.9e-55 219.2 317 47.0
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 8.4e-55 218.4 315 52.4
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.4e-54 217.6 313 51.1
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.9e-54 217.2 348 49.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 3.9e-52 209.5 340 47.4
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.1e-51 208.0 338 42.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 2.5e-51 206.8 336 46.7
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.3e-51 206.5 324 51.2
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.1e-50 203.8 335 43.6
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.7e-50 203.0 335 43.0
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 5.9e-48 195.7 320 42.5
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.7e-47 194.1 308 47.1
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.2e-46 189.9 263 56.3
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 5.5e-46 189.1 376 39.1
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 5.5e-46 189.1 317 46.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.2e-46 188.7 305 43.6
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 9.3e-46 188.3 339 41.3
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 2.7e-45 186.8 260 54.2
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 4.6e-45 186.0 345 45.5
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.3e-44 183.7 300 42.3
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 6.7e-44 182.2 354 43.5
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 8.7e-44 181.8 353 39.1
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.5e-43 180.3 257 55.3
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 7.4e-43 178.7 344 38.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 7.4e-43 178.7 345 38.8
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 3.7e-42 176.4 344 38.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 8.2e-42 175.3 362 38.7
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.5e-40 171.0 305 44.6
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 3.8e-39 166.4 312 36.5
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.5e-39 165.6 304 39.1
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 8.5e-39 165.2 309 40.8
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 8.5e-39 165.2 345 36.5
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 1.2e-37 161.4 240 45.0
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.1e-37 160.6 335 37.0
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.7e-37 160.2 338 43.5
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 7.9e-37 158.7 343 36.4
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 5.1e-36 156.0 237 50.6
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.5e-35 153.7 364 35.4
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 5.7e-35 152.5 336 34.2
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.7e-34 151.0 345 35.9
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.2e-34 150.6 199 52.3
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.3e-34 149.1 248 42.3
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 6.3e-34 149.1 282 41.5
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.0e-32 144.1 300 36.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 2.0e-32 144.1 291 36.8
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 7.7e-32 142.1 294 36.7
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.0e-31 141.7 338 34.3
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.4e-30 137.9 122 70.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 4.4e-27 126.3 300 31.0
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.4e-25 120.6 120 64.2
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 9.4e-22 108.6 302 30.5
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 8.0e-21 105.5 298 34.9
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 5.2e-20 102.8 364 33.5
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.5e-19 101.3 216 33.8
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.0e-19 100.9 298 32.9
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.0e-19 100.9 112 57.1
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.4e-19 99.8 197 36.5
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.4e-17 94.7 107 53.3
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.4e-17 94.7 194 41.2
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 4.5e-16 89.7 102 52.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 8.5e-15 85.5 260 40.0
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.2e-14 83.2 292 28.1
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.1e-13 80.9 94 53.2
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 4.0e-12 76.6 87 48.3
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 6.8e-12 75.9 71 60.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 2.2e-10 70.9 87 43.7
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.0e-09 65.9 76 57.9
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 2.2e-07 60.8 117 35.9
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.2e-07 60.8 311 26.7
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 9.5e-06 55.5 386 26.2


User provided reference genes

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