Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.0e-161 570.9 304 100.0
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 2.1e-158 562.4 304 99.0
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.1e-158 562.4 304 99.0
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 8.2e-158 560.5 304 98.7
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.6e-156 553.9 304 97.0
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.7e-155 552.7 304 96.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.8e-155 551.6 304 96.7
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 4.8e-126 454.9 304 78.3
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.6e-124 449.9 304 78.6
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.5e-122 443.4 304 76.3
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 3.2e-122 442.2 305 77.0
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 4.7e-121 438.3 304 75.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 6.1e-121 438.0 304 75.3
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 8.0e-121 437.6 304 74.7
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 6.8e-120 434.5 304 74.3
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 2.0e-119 433.0 304 73.7
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.4e-119 432.2 304 74.3
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 3.7e-118 428.7 304 74.3
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.4e-117 426.8 304 72.4
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.8e-117 426.4 304 72.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 1.8e-117 426.4 281 78.6
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 3.1e-117 425.6 297 74.7
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 3.1e-117 425.6 304 74.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 4.1e-117 425.2 304 73.0
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 7.0e-117 424.5 303 72.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 7.0e-117 424.5 303 72.6
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.6e-116 423.3 304 72.4
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.6e-116 423.3 304 72.4
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.0e-115 420.6 301 71.8
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.9e-115 419.1 305 72.5
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.8e-115 418.7 304 71.7
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.8e-115 418.7 304 71.7
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 5.0e-115 418.3 300 72.7
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 5.0e-115 418.3 305 73.4
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.9e-114 416.4 295 73.2
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 3.2e-114 415.6 281 77.9
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.2e-114 415.2 304 71.1
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 4.2e-114 415.2 304 71.1
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.1e-113 412.9 295 73.9
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.1e-113 412.9 298 74.2
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 2.7e-113 412.5 305 71.1
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 3.6e-113 412.1 304 70.4
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 6.1e-113 411.4 290 74.1
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 6.1e-113 411.4 294 73.5
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 6.1e-113 411.4 297 71.7
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.8e-112 409.8 290 76.2
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.2e-111 407.1 304 69.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.2e-111 407.1 304 70.7
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.2e-111 407.1 294 72.1
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.5e-111 406.8 304 69.4
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 2.6e-111 406.0 304 72.4
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 7.5e-111 404.4 296 73.0
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 9.8e-111 404.1 289 73.4
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 9.8e-111 404.1 297 71.0
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 69.1
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.3e-110 403.7 304 69.7
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.3e-110 403.7 296 72.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.7e-110 403.3 297 71.4
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 2.2e-110 402.9 297 71.0
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.8e-110 402.5 305 69.8
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.8e-109 399.8 305 70.8
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.8e-109 399.8 304 70.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 3.1e-109 399.1 304 68.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 7.0e-109 397.9 296 71.6
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.6e-108 396.7 305 69.2
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.0e-108 396.4 304 69.4
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 2.7e-108 396.0 304 69.4
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.7e-108 396.0 305 70.5
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.7e-108 396.0 304 68.8
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.7e-108 394.4 296 72.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.0e-107 394.0 297 71.0
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.7e-107 393.3 305 69.5
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 5.0e-107 391.7 290 70.3
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 6.6e-107 391.3 305 69.2
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 5.5e-106 388.3 305 68.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 5.5e-106 388.3 304 67.4
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-105 387.1 304 68.8
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.6e-105 386.7 301 68.4
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.1e-105 386.3 305 68.9
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.1e-105 386.3 298 69.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 3.6e-105 385.6 304 67.4
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.0e-104 382.5 304 67.4
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 6.8e-104 381.3 304 66.8
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 7.5e-103 377.9 296 68.2
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.7e-102 376.7 308 65.9
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 2.2e-102 376.3 291 68.0
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.2e-102 376.3 300 66.3
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.8e-102 375.9 310 65.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 3.7e-102 375.6 309 65.4
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.1e-101 374.0 295 66.8
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 5.4e-101 371.7 273 73.3
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 7.0e-101 371.3 300 65.3
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 9.2e-101 370.9 306 65.7
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.2e-100 370.5 308 64.3
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.0e-100 369.8 281 71.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 4.5e-100 368.6 295 66.1
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 7.8e-100 367.9 305 66.9
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.9e-99 365.5 305 65.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.1e-98 364.0 304 65.5
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.0e-96 355.5 281 69.4
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.6e-95 352.8 281 67.3
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 2.9e-94 349.4 297 61.6
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.4e-93 347.1 302 59.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 3.0e-91 339.3 305 59.3
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.6e-89 333.6 297 61.6
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 4.4e-79 298.9 285 58.9
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.3e-75 287.3 306 52.9
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 2.3e-75 286.6 237 67.1
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.5e-74 283.1 195 73.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.7e-70 270.4 295 52.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.7e-67 258.1 198 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.6e-63 246.5 297 49.2
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.9e-62 242.3 295 51.2
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 7.9e-60 235.0 195 66.7
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.6e-57 227.3 159 74.2
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.1e-56 224.6 163 70.6
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.6e-55 219.9 211 63.0
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 3.2e-53 213.0 139 76.3
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.3e-51 207.6 142 75.4
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.8e-51 207.2 203 56.2
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 2.5e-50 203.4 336 42.3
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 8.1e-49 198.4 301 44.2
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 6.0e-44 182.2 245 50.2
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.0e-43 179.9 99 94.9
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 3.3e-34 149.8 186 50.0
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 7.4e-34 148.7 115 72.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.7e-33 146.4 158 54.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.8e-32 144.1 170 45.9
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 6.5e-30 135.6 111 65.8
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-26 124.8 97 70.1
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.1e-19 99.4 86 60.5
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 2.4e-16 90.5 295 29.5
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 7.0e-16 89.0 58 70.7
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.6e-15 87.8 54 74.1
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 7.7e-15 85.5 302 27.8
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 3.8e-14 83.2 85 58.8
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 6.5e-14 82.4 46 80.4
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.1e-13 81.6 185 36.8
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.0e-11 73.2 150 36.0


User provided reference genes

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