Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 7.1e-74 280.4 133 100.0
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 1.0e-48 196.8 99 96.0
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 8.8e-48 193.7 99 94.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.6e-47 192.2 99 93.9
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 8.2e-46 187.2 98 89.8
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 4.1e-45 184.9 98 88.8
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.9e-43 178.7 99 83.8
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 5.0e-43 177.9 99 83.8
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 3.2e-42 175.3 99 80.8
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 4.2e-42 174.9 99 81.8
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 7.2e-42 174.1 110 75.5
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 7.2e-42 174.1 99 81.8
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 1.6e-41 172.9 97 83.5
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 2.1e-41 172.6 99 80.8
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.7e-41 172.2 99 80.8
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 3.6e-41 171.8 99 82.8
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 6.1e-41 171.0 99 79.8
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 1.4e-40 169.9 97 78.4
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 1.4e-40 169.9 94 83.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.8e-40 169.5 99 79.8
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.8e-40 169.5 99 79.8
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 1.8e-40 169.5 99 79.8
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.8e-40 169.5 98 80.6
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.8e-40 169.5 98 80.6
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 1.8e-40 169.5 98 80.6
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 2.3e-40 169.1 94 84.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 2.3e-40 169.1 94 84.0
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 2.3e-40 169.1 94 84.0
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 2.3e-40 169.1 97 79.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 3.0e-40 168.7 97 80.4
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 3.0e-40 168.7 97 80.4
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 3.0e-40 168.7 99 78.8
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 3.0e-40 168.7 99 78.8
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 3.0e-40 168.7 99 77.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 3.0e-40 168.7 99 78.8
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 3.9e-40 168.3 94 81.9
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 5.2e-40 167.9 94 83.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 5.2e-40 167.9 94 83.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 5.2e-40 167.9 98 77.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 6.7e-40 167.5 97 79.4
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 6.7e-40 167.5 98 79.6
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 6.7e-40 167.5 99 79.8
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 8.8e-40 167.2 97 80.4
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 8.8e-40 167.2 98 75.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.1e-39 166.8 99 78.8
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 1.1e-39 166.8 99 74.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 1.1e-39 166.8 99 77.8
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.5e-39 166.4 99 78.8
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.5e-39 166.4 97 78.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 1.5e-39 166.4 99 74.7
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 1.5e-39 166.4 99 76.8
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.5e-39 166.4 99 78.8
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.5e-39 166.4 99 78.8
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 2.0e-39 166.0 98 77.6
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 2.0e-39 166.0 97 78.4
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.6e-39 165.6 99 78.8
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 2.6e-39 165.6 99 78.8
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 2.6e-39 165.6 98 78.6
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.6e-39 165.6 98 78.6
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 4.4e-39 164.9 94 79.8
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 5.7e-39 164.5 97 79.4
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 7.4e-39 164.1 94 83.0
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 9.7e-39 163.7 99 77.8
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 9.7e-39 163.7 99 76.8
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 1.7e-38 162.9 98 75.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.7e-38 162.9 99 78.8
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.7e-38 162.9 99 75.8
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 1.7e-38 162.9 99 75.8
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 2.2e-38 162.5 109 70.6
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 2.8e-38 162.2 99 74.7
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.8e-38 162.2 99 74.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.8e-38 162.2 99 74.7
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 2.8e-38 162.2 99 73.7
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 3.7e-38 161.8 98 75.5
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 3.7e-38 161.8 99 74.7
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 6.3e-38 161.0 99 76.8
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 8.2e-38 160.6 98 73.5
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.1e-37 160.2 97 75.3
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.1e-37 160.2 99 73.7
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.4e-37 159.8 98 75.5
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.4e-37 159.1 97 77.3
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.3e-37 157.9 78 96.2
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 9.1e-37 157.1 95 74.7
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.2e-36 156.8 97 73.2
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 1.2e-36 156.8 97 75.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.0e-36 156.0 105 70.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 3.5e-36 155.2 99 71.7
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 4.5e-36 154.8 99 69.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 5.9e-36 154.5 116 67.2
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 7.7e-36 154.1 97 72.2
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.0e-35 153.7 105 69.5
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 1.7e-35 152.9 99 70.7
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 2.9e-35 152.1 99 73.7
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 2.9e-35 152.1 99 70.7
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 3.8e-35 151.8 99 69.7
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.0e-35 151.4 97 71.1
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 5.0e-35 151.4 97 71.1
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.5e-34 149.8 95 70.5
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 3.0e-32 142.1 101 68.3
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 1.7e-30 136.3 89 69.7
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.2e-28 130.2 138 50.0
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 3.5e-28 128.6 90 62.2
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.5e-27 124.4 98 62.2
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 8.5e-27 124.0 92 60.9
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 1.1e-26 123.6 99 59.6
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 4.2e-26 121.7 111 55.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 5.5e-26 121.3 69 81.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.5e-26 121.3 70 78.6
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.7e-25 119.0 96 62.5
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.8e-24 116.3 69 81.2
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.0e-23 112.8 100 56.0
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.3e-19 100.1 120 47.5
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.9e-18 96.3 93 47.3
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 5.2e-16 88.2 97 46.4
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 2.9e-11 72.4 86 47.7


User provided reference genes

Program Settings