Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.5e-250 867.5 442 100.0
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 5.4e-243 844.0 442 98.2
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 5.9e-242 840.5 442 98.0
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.0e-237 825.5 442 94.3
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 3.0e-233 811.6 441 93.9
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 8.0e-231 803.5 470 88.5
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.4e-222 776.2 442 89.6
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.3e-220 769.6 442 89.4
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.9e-217 758.1 437 88.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.2e-215 753.1 437 88.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 4.6e-210 734.6 438 84.5
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.3e-209 733.0 442 83.5
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.3e-208 728.0 442 83.9
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.2e-205 719.9 442 82.6
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.9e-203 712.6 445 81.6
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.4e-203 712.2 442 81.7
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 8.7e-201 703.7 437 81.9
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 4.8e-199 698.0 445 80.4
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.8e-198 696.0 444 80.9
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.1e-198 695.3 442 80.8
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 6.9e-198 694.1 432 82.2
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.5e-197 693.0 442 80.3
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.3e-196 689.9 444 80.9
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 6.4e-196 687.6 443 78.8
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.1e-195 686.8 430 81.9
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.4e-195 685.6 429 80.9
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.4e-195 684.5 442 80.1
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.1e-194 682.6 431 80.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.1e-194 682.6 429 82.8
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.7e-194 682.2 432 80.3
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.7e-194 682.2 435 79.5
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.5e-194 681.8 397 85.6
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 4.6e-194 681.4 426 80.0
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 4.6e-194 681.4 397 85.6
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.6e-194 681.4 430 80.0
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 4.6e-194 681.4 427 79.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.0e-194 681.0 426 80.3
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 6.0e-194 681.0 435 77.9
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 6.0e-194 681.0 431 80.5
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 7.9e-194 680.6 424 80.0
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 7.9e-194 680.6 424 80.0
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 7.9e-194 680.6 426 80.0
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 7.9e-194 680.6 441 79.4
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 1.8e-193 679.5 438 79.0
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.8e-193 679.5 438 79.0
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.8e-193 679.5 424 80.2
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.3e-193 679.1 438 78.5
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.3e-193 679.1 438 78.5
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.3e-193 679.1 438 79.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 3.0e-193 678.7 440 79.1
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 3.9e-193 678.3 438 78.8
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 5.1e-193 677.9 438 77.9
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 5.1e-193 677.9 434 79.0
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 5.1e-193 677.9 442 78.1
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 5.1e-193 677.9 429 80.9
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 6.7e-193 677.6 441 78.0
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 8.7e-193 677.2 438 78.8
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.7e-193 677.2 434 78.1
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.5e-192 675.6 426 80.5
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.3e-192 675.2 439 78.4
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 3.3e-192 675.2 434 77.6
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.3e-192 674.9 430 79.1
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 7.4e-192 674.1 459 75.6
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.4e-192 674.1 434 77.9
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.4e-192 674.1 434 77.9
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 9.6e-192 673.7 402 82.3
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.3e-191 673.3 439 80.0
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.3e-191 673.3 437 79.9
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.3e-191 673.3 440 77.3
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.6e-191 672.9 440 79.1
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.6e-191 672.9 432 77.5
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.1e-191 672.5 435 79.1
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 2.1e-191 672.5 435 79.1
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.8e-191 672.2 430 78.8
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.2e-191 671.0 439 78.4
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 6.2e-191 671.0 439 78.4
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 6.2e-191 671.0 442 77.8
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 6.2e-191 671.0 436 78.7
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-190 669.8 429 78.6
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.8e-190 669.5 429 79.3
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.8e-190 669.5 430 80.0
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.0e-190 668.3 429 78.6
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 6.9e-190 667.5 519 68.4
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 6.9e-190 667.5 435 77.5
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 1.2e-189 666.8 429 79.0
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 3.4e-189 665.2 437 77.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 3.4e-189 665.2 401 82.3
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.3e-188 663.3 441 78.9
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.3e-188 663.3 429 78.1
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.3e-188 663.3 559 64.6
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.2e-188 662.5 429 77.9
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 2.2e-188 662.5 416 79.8
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.9e-188 662.1 416 79.8
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.9e-188 661.4 423 78.7
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.1e-187 660.2 433 76.4
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.9e-187 659.4 438 75.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.5e-187 659.1 430 78.1
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 3.2e-187 658.7 440 76.6
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 9.3e-187 657.1 384 83.9
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 3.5e-186 655.2 443 74.3
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 4.6e-186 654.8 480 71.9
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 2.3e-185 652.5 409 78.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 3.9e-185 651.7 428 77.1
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 6.7e-185 651.0 423 78.3
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 7.4e-184 647.5 430 76.5
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.3e-183 646.7 429 76.9
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.6e-183 646.4 410 79.0
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.1e-183 646.0 448 74.8
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.8e-183 645.6 434 75.1
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.2e-183 644.4 430 76.5
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 8.2e-183 644.0 430 76.0
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 8.2e-183 644.0 430 76.0
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 8.2e-183 644.0 427 75.6
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-182 643.7 468 71.8
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 9.0e-182 640.6 434 75.6
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.8e-181 637.9 434 74.0
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.2e-180 636.0 431 76.1
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.9e-180 635.6 431 74.7
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.9e-180 635.6 429 76.0
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 3.8e-180 635.2 439 74.5
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 5.1e-177 624.8 435 73.8
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.9e-176 622.9 410 76.6
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 7.4e-176 620.9 408 77.2
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.3e-175 620.2 380 82.1
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 8.2e-175 617.5 438 73.3
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.4e-174 616.7 380 80.0
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.4e-174 615.9 385 77.7
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 3.1e-174 615.5 382 77.7
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 9.0e-174 614.0 380 81.6
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.6e-173 612.5 393 77.4
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.9e-171 606.3 391 76.0
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.3e-168 595.1 431 71.5
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 9.1e-166 587.4 342 84.2
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 4.5e-165 585.1 353 84.7
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.7e-162 575.9 346 83.8
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.7e-159 566.6 364 78.0
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 5.3e-158 561.6 427 68.9
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 8.0e-154 547.7 337 82.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.5e-152 543.5 365 75.3
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 7.4e-152 541.2 349 80.5
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 3.5e-149 532.3 346 72.8
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 5.9e-149 531.6 360 74.2
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 8.3e-143 511.1 371 69.3
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 3.1e-142 509.2 373 68.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 5.9e-141 505.0 366 71.0
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 8.0e-138 494.6 344 73.5
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 5.7e-136 488.4 435 61.6
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.2e-127 459.9 261 85.8
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.3e-124 449.9 351 65.0
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 4.9e-119 432.2 275 78.2
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 2.5e-115 419.9 434 55.1
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.6e-114 417.2 262 79.8
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.3e-100 370.9 230 80.9
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.5e-99 367.5 232 79.7
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.6e-88 330.1 190 86.3
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.6e-88 330.1 244 68.9
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.2e-82 308.9 186 82.3
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.4e-81 307.8 355 51.0
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.2e-80 304.7 365 45.5
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.1e-70 271.6 155 83.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.0e-64 250.8 202 62.9
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.0e-64 250.8 202 62.9
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.1e-61 240.7 146 80.1
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 8.2e-58 228.8 220 61.4
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.1e-57 228.4 245 56.7
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 7.7e-40 169.1 145 59.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.5e-38 164.9 99 82.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.6e-32 144.8 220 48.2
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.8e-27 125.6 298 35.2
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.0e-23 115.5 78 75.6
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.8e-23 113.6 60 96.7
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 9.8e-19 99.0 80 67.5
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 6.3e-18 96.3 63 77.8
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 6.3e-18 96.3 63 77.8
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.4e-17 95.1 78 64.1
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 7.7e-16 89.4 46 91.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.0e-15 86.7 55 83.6
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 8.6e-15 85.9 83 57.8
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.3e-14 84.0 90 50.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 5.4e-09 66.6 76 51.3
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.2e-08 65.5 76 52.6
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 1.2e-08 65.5 43 76.7
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.6e-08 65.1 76 52.6
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.7e-07 61.6 135 38.5
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 2.3e-07 61.2 37 81.1


User provided reference genes

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