Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.8e-185 651.7 322 100.0
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.3e-163 578.9 322 91.3
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 4.4e-162 574.7 322 90.7
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 3.8e-145 518.5 322 83.5
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.3e-134 482.6 322 77.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 6.3e-100 368.2 324 63.6
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 7.7e-98 361.3 211 88.6
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 3.8e-97 359.0 327 61.8
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 6.5e-97 358.2 327 61.5
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 6.5e-97 358.2 324 60.2
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 6.5e-97 358.2 320 60.9
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 5.2e-94 348.6 328 59.1
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 6.7e-94 348.2 325 60.0
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 5.7e-93 345.1 324 60.8
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.8e-91 340.1 324 57.7
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.5e-90 335.9 326 57.1
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.7e-89 333.6 327 59.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 6.5e-89 331.6 339 57.5
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.5e-88 330.5 327 58.4
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.5e-88 330.5 327 58.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.9e-88 330.1 324 59.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 3.2e-88 329.3 339 57.2
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 4.2e-88 328.9 352 54.5
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 5.5e-88 328.6 327 58.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.2e-87 327.4 322 58.1
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.2e-87 327.4 352 54.3
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.1e-87 326.6 339 57.2
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.1e-87 326.6 330 56.7
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 8.0e-87 324.7 326 56.7
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.4e-86 323.9 338 57.7
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 2.0e-85 320.1 328 54.6
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 4.4e-85 318.9 323 54.8
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 4.8e-84 315.5 323 57.6
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 6.3e-84 315.1 332 56.3
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.4e-83 313.9 331 56.2
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.8e-83 313.5 326 57.7
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 9.1e-83 311.2 326 55.2
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 9.1e-83 311.2 332 56.0
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 5.9e-82 308.5 324 54.6
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 7.7e-82 308.1 328 56.7
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 7.7e-82 308.1 327 54.7
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.0e-81 307.8 329 54.4
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.0e-81 307.8 344 52.9
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.3e-81 307.4 323 55.7
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.7e-81 307.0 339 56.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 3.8e-81 305.8 323 56.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 3.8e-81 305.8 332 55.4
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.1e-80 304.3 336 54.8
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 4.2e-80 302.4 327 54.7
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.4e-80 301.2 323 56.3
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-79 300.8 323 56.3
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-79 300.4 326 53.7
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 2.1e-79 300.1 325 54.2
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.8e-78 297.0 331 56.8
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-78 296.2 326 53.4
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 5.2e-78 295.4 324 54.3
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.5e-77 293.9 325 57.8
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.5e-77 293.9 328 52.4
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.0e-77 293.5 327 55.0
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-77 293.5 323 55.1
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 3.4e-77 292.7 334 54.8
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.4e-77 292.4 328 55.8
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 9.8e-77 291.2 325 53.5
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.8e-76 289.7 332 52.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.7e-76 289.3 328 55.8
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 3.7e-76 289.3 341 52.5
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 4.9e-76 288.9 329 52.9
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 8.3e-76 288.1 329 53.5
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.4e-75 287.3 328 51.8
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.4e-75 286.6 335 54.6
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 9.2e-75 284.6 323 52.0
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.6e-74 283.9 334 52.1
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.3e-73 280.8 271 59.8
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.7e-73 280.4 323 52.0
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 5.0e-73 278.9 334 51.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 5.0e-73 278.9 327 53.2
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 5.0e-73 278.9 335 51.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 3.3e-72 276.2 328 50.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.3e-72 275.8 329 50.5
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-71 274.2 300 53.0
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 8.0e-71 271.6 333 50.8
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.0e-69 266.9 411 43.3
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.0e-69 266.9 311 54.0
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 3.7e-68 262.7 324 49.7
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 8.3e-68 261.5 327 48.9
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.4e-67 260.8 329 48.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.6e-66 257.3 321 48.6
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 5.9e-66 255.4 333 51.7
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.1e-63 246.9 250 57.6
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 3.1e-62 243.0 324 48.1
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-61 241.1 335 51.3
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 3.4e-61 239.6 301 50.8
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 2.9e-60 236.5 336 49.7
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 2.9e-60 236.5 330 50.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 4.9e-60 235.7 336 49.7
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 4.9e-60 235.7 336 49.7
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 8.3e-60 235.0 336 50.0
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.1e-59 234.6 336 49.7
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 5.4e-59 232.3 326 48.2
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.7e-58 229.9 266 51.9
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 4.6e-58 229.2 328 45.1
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.0e-57 228.0 331 47.7
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.7e-57 227.3 333 47.7
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 4.3e-56 222.6 326 45.4
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 5.6e-56 222.2 327 45.0
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.8e-55 219.9 329 45.3
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-53 213.8 356 44.1
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.6e-53 213.4 355 44.5
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.8e-53 211.5 360 43.6
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 6.4e-52 208.8 320 45.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 4.6e-50 202.6 356 42.7
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.9e-49 199.5 323 42.1
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.4e-46 191.0 111 84.7
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.4e-46 191.0 292 43.8
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 9.6e-40 168.3 333 42.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 6.2e-39 165.6 320 40.6
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 3.1e-38 163.3 377 36.1
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.5e-37 161.0 322 41.6
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 5.8e-37 159.1 346 39.6
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.9e-36 156.8 161 53.4
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-34 151.4 266 44.4
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 4.6e-34 149.4 119 66.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 5.6e-32 142.5 185 49.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 7.3e-32 142.1 195 47.2
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 9.0e-30 135.2 198 47.0
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 9.0e-30 135.2 184 51.1
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.0e-29 134.0 182 47.3
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 7.6e-29 132.1 163 50.3
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.3e-28 131.3 107 66.4
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.2e-28 130.6 273 34.4
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 2.4e-27 127.1 307 36.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.2e-27 126.3 303 38.9
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.4e-27 125.9 198 44.9
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 5.4e-27 125.9 116 56.9
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 7.1e-27 125.6 303 38.6
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 7.1e-27 125.6 184 46.2
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 7.1e-27 125.6 210 42.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.2e-26 124.8 303 38.6
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 4.6e-26 122.9 174 45.4
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-25 120.9 103 64.1
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 3.0e-25 120.2 107 61.7
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.1e-24 118.2 160 48.8
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 8.1e-23 112.1 193 42.0
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 8.1e-23 112.1 193 42.0
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.2e-18 98.2 273 34.1
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.6e-18 96.3 146 44.5
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.5e-16 90.5 81 64.2
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 4.0e-14 83.2 187 38.0
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 4.9e-12 76.3 71 59.2
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 2.1e-10 70.9 58 60.3
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.6e-10 69.7 56 64.3
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-09 68.2 136 43.4
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 3.0e-09 67.0 120 40.0
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 2.1e-07 60.8 58 51.7
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.1e-06 56.6 57 59.6


User provided reference genes

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