Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.5e-135 485.0 243 100.0
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 5.8e-130 467.6 243 95.9
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 4.9e-129 464.5 243 95.5
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 4.7e-124 448.0 244 90.2
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.9e-121 438.7 244 89.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.9e-121 438.7 244 88.9
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.1e-119 432.6 244 88.1
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 9.6e-101 370.5 238 74.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.1e-100 369.4 227 77.1
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 5.3e-99 364.8 244 72.5
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 5.3e-99 364.8 244 74.2
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 6.9e-99 364.4 227 76.2
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 9.0e-99 364.0 227 75.8
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.2e-98 363.6 223 76.7
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 74.2
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.6e-98 362.5 244 72.1
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.9e-97 359.0 227 73.6
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 8.4e-97 357.5 225 76.0
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.4e-96 356.7 224 75.9
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 2.4e-96 355.9 227 71.4
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 3.2e-96 355.5 225 75.1
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.2e-96 355.5 227 73.1
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 5.4e-96 354.8 224 75.4
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 7.1e-96 354.4 241 69.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.2e-95 353.6 230 72.6
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.2e-95 353.6 224 73.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.1e-95 352.8 222 73.9
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.1e-95 352.8 241 68.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 6.0e-95 351.3 241 69.7
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 6.0e-95 351.3 227 73.6
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.0e-94 350.5 224 75.9
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 1.0e-94 350.5 227 73.1
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 3.9e-94 348.6 227 73.1
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.1e-94 348.2 241 68.5
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.1e-93 347.1 242 71.5
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 3.3e-93 345.5 241 68.0
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 4.3e-93 345.1 241 68.5
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 4.3e-93 345.1 224 73.2
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 7.3e-93 344.4 229 70.7
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 9.6e-93 344.0 227 69.6
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 9.6e-93 344.0 227 71.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 9.6e-93 344.0 222 75.2
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 9.6e-93 344.0 235 70.6
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.3e-92 343.6 225 73.8
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 2.1e-92 342.8 224 71.9
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 2.1e-92 342.8 235 70.6
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 2.8e-92 342.4 227 71.4
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.6e-92 342.0 228 69.3
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 3.6e-92 342.0 227 71.8
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 4.8e-92 341.7 225 72.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 6.2e-92 341.3 223 72.6
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 8.1e-92 340.9 243 67.9
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-91 340.5 225 71.6
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.4e-91 340.1 222 72.5
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.8e-91 339.7 258 65.5
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 4.0e-91 338.6 222 72.1
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 9.0e-91 337.4 224 70.5
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 9.0e-91 337.4 244 67.2
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 1.2e-90 337.0 224 69.6
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 2.0e-90 336.3 240 67.1
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 2.6e-90 335.9 223 70.0
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.4e-90 335.5 240 66.7
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.4e-90 335.5 240 66.7
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 4.5e-90 335.1 240 66.7
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 4.5e-90 335.1 240 66.7
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 4.5e-90 335.1 224 70.1
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 4.5e-90 335.1 227 66.5
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 9.9e-90 334.0 240 66.7
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 9.9e-90 334.0 240 66.7
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.3e-89 333.6 245 64.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.2e-89 332.8 240 64.6
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 2.9e-89 332.4 224 69.6
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 2.9e-89 332.4 224 69.6
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.9e-88 329.7 236 65.7
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.4e-88 329.3 229 69.4
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 3.2e-88 328.9 224 66.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 7.1e-88 327.8 223 67.7
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 9.3e-88 327.4 244 64.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 2.7e-87 325.9 213 70.9
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 2.7e-87 325.9 279 60.2
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 7.9e-87 324.3 241 63.9
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.3e-86 322.8 241 63.5
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.1e-85 320.5 240 64.6
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 4.8e-84 315.1 243 63.0
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.4e-83 312.8 229 66.8
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 5.3e-83 311.6 264 61.7
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 7.6e-82 307.8 193 73.6
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.7e-81 306.6 246 60.2
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.4e-80 303.5 222 64.9
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 6.9e-75 284.6 244 61.5
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.5e-74 283.5 195 71.3
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 3.4e-74 282.3 197 68.0
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 5.8e-74 281.6 223 59.2
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-72 276.6 205 66.3
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 4.3e-69 265.4 173 74.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 3.8e-65 252.3 224 54.5
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 7.9e-63 244.6 173 68.8
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.4e-62 243.8 222 56.3
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 2.0e-61 240.0 155 71.0
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.4e-59 233.0 227 54.2
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 5.0e-57 225.3 227 52.0
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.3e-54 216.5 226 51.8
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.6e-50 203.0 155 62.6
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 8.5e-49 198.0 243 46.9
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 3.6e-47 192.6 227 47.1
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 4.7e-47 192.2 139 64.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.0e-46 191.0 226 46.9
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 6.7e-46 188.3 276 39.5
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 4.8e-44 182.2 128 66.4
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.5e-40 170.6 224 42.0
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.2e-37 161.0 197 47.7
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 3.6e-31 139.4 261 35.6
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.4e-30 137.5 176 43.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.9e-24 117.1 114 53.5
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-24 116.7 80 67.5
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-20 104.0 65 72.3
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 2.0e-18 97.1 51 84.3
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.3e-14 83.6 51 72.5
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 3.1e-14 83.2 66 59.1
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 4.4e-13 79.3 61 63.9
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 2.3e-09 67.0 47 59.6
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-08 64.7 50 66.0
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.2e-07 61.2 117 31.6
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 4.7e-07 59.3 39 69.2


User provided reference genes

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