Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.5e-127 457.2 235 100.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.3e-122 440.7 235 96.6
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 4.7e-121 438.0 235 95.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.4e-109 399.1 235 88.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 4.9e-102 374.8 235 82.1
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.7e-92 342.4 235 77.0
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-90 336.3 235 74.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-83 313.9 235 70.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.8e-81 305.8 235 68.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.7e-81 305.4 236 69.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.8e-79 298.1 225 69.3
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.5e-77 292.7 207 70.5
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.8e-75 286.6 217 66.8
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.9e-74 283.1 207 68.6
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.7e-74 281.6 205 67.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 7.4e-74 281.2 225 63.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 9.6e-74 280.8 210 65.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.3e-73 280.4 209 67.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-73 280.0 263 60.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.1e-73 279.6 222 65.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.8e-73 279.3 218 65.1
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 8.2e-73 277.7 211 65.9
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.1e-72 277.3 228 62.3
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 6.9e-72 274.6 221 62.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 3.4e-71 272.3 217 65.9
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.5e-71 271.9 207 66.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.9e-71 271.6 221 61.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 6.5e-70 268.1 208 63.9
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.7e-68 262.7 183 70.5
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.7e-68 262.7 221 61.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.7e-68 262.7 221 61.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.5e-68 262.3 212 62.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.5e-68 262.3 232 59.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.6e-68 261.9 221 61.1
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 6.1e-68 261.5 220 61.8
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.1e-68 261.5 230 60.9
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.0e-67 260.8 222 59.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.9e-67 258.8 210 64.3
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 8.7e-67 257.7 184 69.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 8.7e-67 257.7 223 60.5
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-66 257.3 215 60.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.5e-66 256.9 211 63.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.9e-66 256.5 223 58.3
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.9e-66 256.5 188 69.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.9e-66 256.5 209 61.7
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.5e-66 256.1 223 60.1
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 4.3e-66 255.4 207 62.8
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.3e-66 255.4 209 63.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-65 253.8 211 61.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.3e-65 253.8 220 59.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.2e-65 253.1 227 56.8
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.2e-65 253.1 229 58.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.2e-65 253.1 230 57.8
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-65 253.1 207 64.7
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-65 252.7 156 78.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 6.3e-65 251.5 211 59.7
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 6.3e-65 251.5 210 60.0
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 6.3e-65 251.5 214 63.6
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.3e-65 251.5 209 60.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.1e-64 250.8 152 77.6
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.1e-64 250.8 152 78.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.8e-64 250.0 182 68.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.1e-64 249.2 179 68.2
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.1e-64 249.2 173 69.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.1e-64 249.2 173 69.9
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.1e-64 248.8 224 58.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.2e-63 247.3 188 66.5
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.2e-63 247.3 209 60.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.5e-63 246.9 216 59.7
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 4.5e-63 245.4 176 68.8
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 4.5e-63 245.4 176 68.8
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.5e-63 245.4 176 68.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 5.9e-63 245.0 214 58.4
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 5.9e-63 245.0 205 63.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 5.9e-63 245.0 215 61.4
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.9e-63 245.0 205 59.5
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 5.9e-63 245.0 216 57.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 7.7e-63 244.6 197 61.4
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.3e-62 243.8 234 54.3
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.7e-62 243.4 150 77.3
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.7e-62 243.4 182 64.3
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 5.0e-62 241.9 201 60.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.5e-62 241.5 207 60.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.5e-62 241.5 221 58.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 8.5e-62 241.1 211 60.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.1e-61 240.7 223 56.1
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.4e-61 240.4 223 57.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.4e-61 240.4 199 61.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.9e-61 240.0 150 77.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.9e-61 240.0 221 58.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.9e-61 240.0 207 61.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.5e-61 239.6 207 57.5
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 2.5e-61 239.6 187 63.6
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.5e-61 239.6 203 58.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.2e-61 239.2 207 60.4
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 4.2e-61 238.8 146 78.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 4.2e-61 238.8 204 60.3
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 4.2e-61 238.8 201 59.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 5.5e-61 238.4 200 58.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 5.5e-61 238.4 200 58.0
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.2e-61 238.0 203 62.6
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.2e-61 238.0 255 51.8
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 7.2e-61 238.0 207 56.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.2e-60 237.3 184 64.1
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.1e-60 236.5 220 60.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.7e-60 236.1 225 53.8
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.6e-60 235.7 150 76.0
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.8e-59 233.4 242 55.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.9e-59 232.3 226 55.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 6.7e-59 231.5 207 54.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 8.8e-59 231.1 193 61.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.5e-58 230.3 240 54.6
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.5e-58 230.3 144 75.0
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.0e-58 229.9 230 51.7
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.3e-58 228.8 179 61.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 9.7e-58 227.6 141 76.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 9.7e-58 227.6 144 72.9
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.8e-56 223.4 204 55.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.4e-56 223.0 216 53.7
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.9e-54 216.1 177 63.8
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 4.2e-53 212.2 200 53.5
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 3.6e-52 209.1 150 63.3
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.3e-50 202.6 128 72.7
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.4e-50 202.2 148 68.2
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.6e-47 193.0 209 50.7
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.3e-46 190.7 171 59.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.5e-45 186.4 142 62.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 4.2e-45 185.7 184 52.2
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.6e-44 183.7 171 60.2
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.1e-44 183.3 142 59.9
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.7e-44 182.2 217 47.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.7e-43 178.3 166 53.0
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-42 177.6 160 61.2
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.1e-42 177.6 139 55.4
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 3.1e-40 169.5 135 63.7
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.0e-39 166.8 136 61.0
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.9e-38 162.9 211 45.5
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 4.0e-35 152.5 155 54.8
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.8e-35 151.4 127 63.0
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 9.8e-34 147.9 179 46.4
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 4.8e-33 145.6 146 54.1
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.9e-30 136.3 223 40.4
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-25 120.9 162 45.7
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.6e-22 108.6 106 55.7
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.1e-21 107.8 79 62.0
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 4.7e-20 102.4 167 34.7
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.0e-19 99.4 146 37.7
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.8e-18 94.7 89 56.2
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-16 91.3 131 37.4
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.1e-13 81.3 144 34.7
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 9.5e-13 78.2 154 31.8
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-11 74.7 163 33.1
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.1e-11 73.2 122 32.8
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.8e-11 72.0 83 55.4
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.6e-10 70.1 126 29.4
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 9.8e-10 68.2 83 47.0
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 6.0e-07 58.9 65 49.2


User provided reference genes

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