Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 0.0e+00 1078.5 539 100.0
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 3.0e-296 1021.1 534 95.7
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 7.4e-295 1016.5 534 95.1
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 3.8e-259 897.9 540 84.3
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 5.0e-259 897.5 539 82.9
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.5e-258 896.0 547 82.6
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 4.5e-236 821.2 539 77.7
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.5e-181 639.4 542 61.1
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 9.3e-173 610.9 509 60.9
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.6e-172 610.1 509 61.1
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.1e-172 609.8 548 58.4
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 2.1e-172 609.8 519 60.5
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 9.7e-170 600.9 542 56.6
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 2.8e-169 599.4 532 58.1
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 1.3e-166 590.5 535 56.6
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.3e-166 590.5 496 58.1
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 2.5e-165 586.3 538 54.6
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 3.2e-165 585.9 428 65.0
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 9.4e-165 584.3 499 58.9
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.6e-164 583.6 512 58.2
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 6.7e-163 578.2 514 59.5
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 8.8e-163 577.8 478 59.4
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 2.0e-162 576.6 478 59.4
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 4.3e-162 575.5 475 59.6
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 7.4e-162 574.7 464 61.4
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.7e-161 572.4 478 59.2
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 3.7e-161 572.4 533 54.4
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 6.3e-161 571.6 540 55.6
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 4.1e-160 568.9 471 58.8
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 1.2e-159 567.4 513 57.1
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 2.0e-159 566.6 513 56.1
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.4e-159 565.8 489 58.5
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.0e-158 564.3 468 58.8
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 1.7e-158 563.5 473 57.7
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 2.2e-158 563.1 485 57.3
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 2.9e-158 562.8 541 54.3
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 5.0e-158 562.0 502 57.6
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 6.5e-158 561.6 499 57.1
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 8.5e-158 561.2 478 58.6
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 1.4e-157 560.5 471 58.0
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.4e-157 560.5 520 54.8
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 1.9e-157 560.1 499 56.5
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 2.5e-157 559.7 468 59.0
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 4.2e-157 558.9 503 54.7
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 5.5e-157 558.5 408 65.0
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 5.5e-157 558.5 472 57.8
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 1.2e-156 557.4 530 54.5
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 2.1e-156 556.6 534 54.1
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 6.7e-155 551.6 478 57.1
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 8.8e-155 551.2 515 53.4
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 1.5e-154 550.4 448 59.6
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.8e-152 543.5 527 53.9
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 2.6e-151 539.7 463 57.7
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.3e-150 537.3 400 62.5
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 2.2e-150 536.6 509 53.4
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 5.0e-150 535.4 482 56.2
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.9e-149 533.5 448 58.5
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.9e-149 533.5 416 59.6
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 3.2e-149 532.7 416 59.6
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 5.5e-149 531.9 467 55.5
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 7.2e-149 531.6 460 55.4
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 2.7e-148 529.6 468 56.0
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.8e-147 526.9 470 56.4
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 5.2e-147 525.4 471 56.5
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 6.7e-147 525.0 470 56.2
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 3.3e-146 522.7 433 57.7
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 4.4e-146 522.3 476 55.7
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 5.7e-146 521.9 506 54.2
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 7.4e-146 521.5 473 55.6
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 1.7e-145 520.4 435 59.3
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 4.8e-145 518.8 485 54.6
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.4e-144 517.3 406 57.6
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 1.3e-142 510.8 492 55.1
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 5.0e-142 508.8 459 54.2
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 5.0e-142 508.8 391 62.1
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 3.2e-141 506.1 472 54.4
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 1.6e-140 503.8 474 54.9
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 4.7e-140 502.3 472 54.7
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 6.1e-140 501.9 520 50.2
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 8.0e-140 501.5 472 54.2
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 5.3e-136 488.8 444 56.1
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 5.0e-126 455.7 360 57.5
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 9.5e-117 424.9 287 71.4
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 4.7e-116 422.5 393 52.2
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 8.9e-115 418.3 387 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 9.8e-114 414.8 465 44.7
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 2.9e-113 413.3 293 65.9
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 6.4e-113 412.1 293 66.2
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.1e-109 401.4 354 54.2
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.5e-106 391.0 310 59.4
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 6.2e-100 369.0 285 64.2
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.2e-95 354.8 568 40.3
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.6e-95 354.4 285 60.0
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 9.9e-90 335.1 514 37.9
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.9e-88 330.9 459 38.8
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 3.5e-87 326.6 338 46.7
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 3.5e-87 326.6 338 46.7
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.9e-85 320.9 258 64.0
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 4.0e-83 313.2 235 64.7
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 1.5e-82 311.2 230 65.7
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 4.4e-82 309.7 211 65.9
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.1e-75 287.0 243 61.7
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 1.5e-61 241.5 472 32.8
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 1.6e-60 238.0 293 42.7
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.1e-59 233.8 168 63.1
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 4.0e-59 233.4 317 39.4
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 5.7e-45 186.4 290 34.1
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 8.2e-44 182.6 183 52.5
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 3.2e-40 170.6 207 45.4
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 1.6e-39 168.3 181 46.4
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 3.3e-37 160.6 110 70.9
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 8.2e-36 156.0 227 40.5
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 1.8e-35 154.8 184 45.1
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.5e-34 151.8 378 28.3
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 7.7e-34 149.4 400 29.0
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.0e-30 137.5 99 70.7
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 1.1e-27 129.0 321 30.8
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.0e-25 120.2 91 67.0
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 1.1e-24 119.0 129 46.5
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 2.7e-18 97.8 98 49.0
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 5.2e-14 83.6 66 72.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.4e-13 80.9 63 57.1
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.9e-10 70.1 47 63.8
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 6.6e-09 66.6 35 71.4


User provided reference genes

Program Settings