Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024108 Solanum tuberosum HOM05D003652 ORTHO05D004190 9.4e-116 420.2 216 100.0
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 4.8e-112 407.9 215 96.7
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.4e-111 405.6 215 95.8
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 8.5e-109 397.1 215 94.0
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 2.7e-107 392.1 212 93.4
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 4.7e-107 391.3 215 91.2
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.4e-106 389.8 221 90.5
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 8.8e-98 360.5 215 85.1
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.1e-97 360.1 214 85.5
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 1.3e-96 356.7 215 84.7
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.7e-96 355.1 212 85.4
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 2.7e-94 349.0 215 83.3
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 3.5e-94 348.6 216 83.3
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 7.7e-94 347.4 216 83.3
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 1.0e-93 347.1 215 83.7
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 1.3e-93 346.7 215 82.3
Rhsim10G0066500 Rhododendron simsii HOM05D003652 ORTHO05D004190 1.3e-93 346.7 216 82.4
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 2.5e-92 342.4 224 79.9
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 2.5e-92 342.4 222 80.6
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 2.5e-92 342.4 215 81.9
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 1.6e-91 339.7 215 80.0
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 1.6e-91 339.7 215 80.5
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 4.7e-91 338.2 215 80.9
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 6.1e-91 337.8 217 80.6
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 1.8e-90 336.3 214 80.8
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.8e-90 336.3 215 80.0
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 3.0e-90 335.5 215 80.9
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 4.0e-90 335.1 224 79.5
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 6.8e-90 334.3 215 78.1
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 2.0e-89 332.8 215 78.1
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 2.6e-89 332.4 215 79.1
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 3.4e-89 332.0 215 80.5
Sopen12g029110 Solanum pennellii HOM05D003652 ORTHO05D004190 3.4e-89 332.0 215 80.5
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 4.4e-89 331.6 215 79.5
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 9.8e-89 330.5 221 78.7
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 1.7e-88 329.7 215 78.6
COL.COLO4_37835 Corchorus olitorius HOM05D003652 ORTHO05D004190 6.3e-88 327.8 216 78.7
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 1.1e-87 327.0 225 76.9
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 1.1e-87 327.0 215 77.2
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 1.1e-87 327.0 216 78.7
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 1.4e-87 326.6 212 79.2
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 3.1e-87 325.5 216 78.2
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 4.1e-87 325.1 213 79.3
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 5.4e-87 324.7 215 77.2
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 5.4e-87 324.7 212 76.9
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 5.4e-87 324.7 215 78.1
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 5.4e-87 324.7 221 77.4
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 7.0e-87 324.3 214 78.0
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 9.1e-87 323.9 215 76.3
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 1.6e-86 323.2 215 76.3
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 1.6e-86 323.2 215 76.3
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 2.0e-86 322.8 217 77.9
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 2.0e-86 322.8 215 76.7
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 2.7e-86 322.4 215 75.3
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.7e-86 322.4 215 76.3
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 3.5e-86 322.0 212 76.4
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 4.5e-86 321.6 212 74.1
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 5.9e-86 321.2 215 75.8
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 5.9e-86 321.2 215 75.8
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 5.9e-86 321.2 215 75.8
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 5.9e-86 321.2 215 75.8
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 7.7e-86 320.9 217 77.4
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 1.3e-85 320.1 212 75.5
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 1.3e-85 320.1 218 78.4
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 1.7e-85 319.7 221 77.4
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 6.5e-85 317.8 215 73.0
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 1.1e-84 317.0 215 73.0
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 4.2e-84 315.1 215 76.7
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 7.2e-84 314.3 216 73.1
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 7.2e-84 314.3 215 77.2
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 9.4e-84 313.9 212 75.0
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 9.4e-84 313.9 215 75.3
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 2.7e-83 312.4 233 71.2
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 1.8e-82 309.7 212 73.1
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 6.8e-82 307.8 212 73.6
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 6.8e-82 307.8 212 73.6
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 1.2e-81 307.0 215 76.3
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 1.5e-81 306.6 213 73.7
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 4.4e-81 305.1 216 75.9
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 5.7e-81 304.7 213 72.8
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 2.8e-80 302.4 198 77.8
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 1.2e-78 297.0 215 75.3
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 4.5e-78 295.0 220 72.3
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 3.8e-77 292.0 215 70.2
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 5.0e-77 291.6 215 69.8
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 6.6e-77 291.2 223 74.0
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 1.9e-76 289.7 215 72.6
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 2.5e-76 289.3 216 73.1
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 3.3e-76 288.9 216 72.7
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 5.6e-76 288.1 172 83.1
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 1.2e-75 287.0 216 74.1
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.6e-75 286.6 217 70.5
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.8e-75 285.8 216 69.4
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 4.7e-75 285.0 216 70.4
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 1.0e-74 283.9 215 68.4
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.5e-73 280.0 216 69.0
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 3.4e-73 278.9 217 69.1
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 4.4e-73 278.5 215 66.0
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 4.4e-73 278.5 216 69.0
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 1.7e-72 276.6 216 68.1
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 1.7e-72 276.6 216 68.1
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 2.2e-72 276.2 217 67.3
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 2.2e-72 276.2 216 67.6
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 2.2e-72 276.2 216 67.6
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 2.9e-72 275.8 216 68.1
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 2.9e-72 275.8 215 70.7
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 4.9e-72 275.0 161 84.5
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 6.4e-72 274.6 216 67.6
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 2.7e-70 269.2 215 68.8
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 4.6e-70 268.5 216 66.2
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 1.0e-69 267.3 217 67.3
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 1.0e-69 267.3 216 65.7
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 1.0e-69 267.3 216 65.7
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 5.0e-69 265.0 205 69.8
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 5.0e-69 265.0 205 69.8
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 1.5e-68 263.5 217 67.3
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 1.9e-68 263.1 217 65.9
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 5.6e-68 261.5 217 65.4
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 2.0e-65 253.1 216 65.7
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 4.4e-65 251.9 217 64.1
MBI09_g47603_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 6.4e-64 248.1 196 68.9
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.4e-63 246.9 206 65.0
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 4.1e-63 245.4 216 60.6
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 5.6e-60 235.0 216 58.3
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 1.2e-59 233.8 220 58.6
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 4.7e-59 231.9 222 60.4
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 4.0e-58 228.8 221 58.4
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 1.3e-56 223.8 176 67.6
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 1.7e-56 223.4 165 70.3
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 2.2e-56 223.0 206 60.2
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.8e-51 206.1 218 53.7
MBI09_g18624_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.6e-51 205.7 194 59.8
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 4.9e-40 168.7 169 53.3
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 4.2e-39 165.6 112 72.3
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 1.5e-36 157.1 173 51.4
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 6.4e-32 141.7 169 46.2
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.6e-30 137.1 169 45.0
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.8e-29 133.7 169 43.2
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 3.6e-27 125.9 70 88.6
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-26 123.6 183 42.1
A02p20930 Brassica napus HOM05D003652 ORTHO05D004190 1.5e-25 120.6 128 55.5
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 2.2e-24 116.7 69 79.7
BcaC05g26024 Brassica carinata HOM05D003652 ORTHO05D004190 3.2e-23 112.8 107 57.0
FAN10G3104 Fragaria x ananassa HOM05D003652 ORTHO05D004190 4.2e-23 112.5 75 70.7
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.3e-21 106.7 174 35.6
A06p17210 Brassica napus HOM05D003652 ORTHO05D004190 7.4e-20 101.7 151 45.0
C05p19910 Brassica napus HOM05D003652 ORTHO05D004190 2.5e-12 76.6 94 46.8
BolC5t30688H Brassica oleracea HOM05D003652 ORTHO05D004190 2.5e-12 76.6 94 46.8


User provided reference genes

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