Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.9e-42 173.7 84 100.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.9e-40 168.7 84 96.4
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 5.2e-38 160.6 84 92.9
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 5.9e-34 147.1 85 83.5
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.7e-31 137.5 85 77.6
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 8.9e-30 133.3 83 74.7
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.9e-27 125.6 85 71.8
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 3.2e-27 124.8 85 72.9
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 2.0e-26 122.1 79 73.4
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 1.1e-24 116.3 72 80.6
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 1.6e-23 112.5 74 73.0
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 4.4e-21 104.4 80 63.8
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 6.4e-20 100.5 81 61.7
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.1e-19 99.8 80 60.0
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.2e-19 98.2 80 60.0
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 3.2e-19 98.2 80 60.0
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 2.7e-18 95.1 81 54.3
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 3.0e-17 91.7 81 53.1
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 3.0e-17 91.7 68 58.8
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 3.3e-16 88.2 81 49.4
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 6.2e-15 84.0 56 62.5
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 8.1e-15 83.6 56 66.1
CAN.G2197.1 Capsicum annuum HOM05D008200 ORTHO05D010849 1.1e-14 83.2 56 64.3
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.4e-14 82.8 56 64.3
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.8e-14 82.4 56 66.1
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.4e-14 82.0 56 60.7
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 2.4e-14 82.0 56 60.7
Solyc03g020060.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 5.2e-14 80.9 56 62.5
Sopen11g011140 Solanum pennellii HOM05D008200 ORTHO05D010849 8.9e-14 80.1 75 45.3
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 2.0e-13 79.0 76 52.6
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 4.4e-13 77.8 81 45.7
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 9.9e-13 76.6 56 55.4
Solyc11g020990.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.2e-12 75.5 83 42.2
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 2.9e-12 75.1 81 46.9
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.8e-12 74.7 79 45.6
Peaxi162Scf00798g00320 Petunia axillaris HOM05D008200 ORTHO05D007342 6.4e-12 73.9 84 48.8
PGSC0003DMG400039762 Solanum tuberosum HOM05D008200 ORTHO05D010849 6.4e-12 73.9 52 61.5
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.9e-11 72.4 64 46.9
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-11 72.4 77 42.9
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-11 72.4 75 44.0
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.9e-11 72.4 75 45.3
Nitab4.5_0003324g0100 Nicotiana tabacum HOM05D008200 ORTHO05D010849 3.2e-11 71.6 56 53.6
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 4.1e-11 71.2 74 47.3
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 9.2e-11 70.1 76 46.1
CAN.G861.42 Capsicum annuum HOM05D008200 ORTHO05D010849 1.2e-10 69.7 52 55.8
Solyc03g020030.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.2e-10 69.7 51 60.8
Solyc03g020040.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.2e-10 69.7 51 60.8
Sopen03g029600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.2e-10 69.7 51 60.8
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 1.6e-10 69.3 79 46.8
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.6e-10 69.3 79 46.8
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 2.7e-10 68.6 78 48.7
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.7e-10 68.6 77 41.6
Nitab4.5_0000363g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 3.5e-10 68.2 56 50.0
Nitab4.5_0004437g0040 Nicotiana tabacum HOM05D008200 ORTHO05D010849 4.6e-10 67.8 68 36.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 6.0e-10 67.4 77 49.4
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 7.8e-10 67.0 76 40.8
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.0e-09 66.6 79 44.3
PGSC0003DMG400015287 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.7e-09 65.9 51 56.9
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.3e-09 65.5 79 46.8
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.0e-09 65.1 72 51.4
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 3.0e-09 65.1 77 46.8
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 3.0e-09 65.1 77 49.4
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 3.9e-09 64.7 72 51.4
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.9e-09 64.7 72 51.4
Sopen03g029580 Solanum pennellii HOM05D008200 ORTHO05D010849 3.9e-09 64.7 51 54.9
Nitab4.5_0010009g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 5.1e-09 64.3 68 36.8
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 6.6e-09 63.9 78 42.3
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.7e-09 63.5 79 44.3
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.1e-08 63.2 72 45.8
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-08 63.2 76 42.1
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.5e-08 62.8 72 45.8
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.5e-08 62.8 77 46.8
Peaxi162Scf00391g00620 Petunia axillaris HOM05D008200 ORTHO05D010849 1.9e-08 62.4 41 63.4
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.9e-08 62.4 56 51.8
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.9e-08 62.4 56 50.0
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 2.5e-08 62.0 75 45.3
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.5e-08 62.0 79 45.6
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.5e-08 62.0 58 46.6
Nitab4.5_0005255g0020 Nicotiana tabacum HOM05D008200 ORTHO05D010849 2.5e-08 62.0 68 35.3
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 3.3e-08 61.6 82 43.9
Solyc11g020960.2 Solanum lycopersicum HOM05D008200 ORTHO05D010849 3.3e-08 61.6 81 38.3
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.3e-08 61.2 70 50.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.3e-08 61.2 78 42.3
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.3e-08 60.5 78 46.2
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 7.3e-08 60.5 82 39.0
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 7.3e-08 60.5 79 43.0
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 9.6e-08 60.1 82 42.7
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-07 59.7 77 46.8
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-07 59.7 70 44.3
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-07 59.7 70 44.3
PGSC0003DMG400009267 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.2e-07 59.7 81 39.5
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 2.1e-07 58.9 79 44.3
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 2.1e-07 58.9 56 48.2
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 2.1e-07 58.9 75 37.3
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 2.8e-07 58.5 83 41.0
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 3.6e-07 58.2 79 45.6
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 4.7e-07 57.8 71 47.9
Nitab4.5_0014015g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 8.1e-07 57.0 60 36.7
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 8.1e-07 57.0 71 47.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.8e-06 55.8 67 46.3
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 2.4e-06 55.5 83 33.7
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 4.0e-06 54.7 67 43.3
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.0e-06 54.7 76 43.4
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.0e-06 54.7 68 47.1
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 4.0e-06 54.7 75 42.7
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 5.2e-06 54.3 77 39.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 5.2e-06 54.3 75 48.0
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 5.2e-06 54.3 75 48.0
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 5.2e-06 54.3 65 38.5
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 6.9e-06 53.9 54 50.0
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 6.9e-06 53.9 50 54.0
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 9.0e-06 53.5 72 44.4
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 9.0e-06 53.5 65 46.2


User provided reference genes

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