Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.0e-188 661.0 341 100.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.6e-184 648.7 341 97.1
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.8e-182 642.5 341 96.5
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-151 540.0 338 82.5
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 5.6e-131 471.5 345 68.7
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 1.5e-128 463.4 336 69.9
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 2.6e-128 462.6 339 68.1
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 3.7e-127 458.8 337 73.3
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 6.0e-125 451.4 319 68.0
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.4e-121 440.3 337 66.2
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.4e-121 440.3 344 66.3
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.2e-120 437.2 315 67.0
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.2e-120 437.2 342 63.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.0e-120 436.4 332 67.5
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.6e-120 436.0 347 64.6
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 4.4e-120 435.3 316 67.7
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 8.4e-119 431.0 341 63.3
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.4e-118 430.3 343 63.0
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.9e-118 429.9 341 63.0
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 1.9e-118 429.9 341 63.6
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.2e-118 428.7 351 63.2
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.2e-118 428.7 336 63.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 2.7e-117 426.0 340 63.5
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.5e-117 425.6 314 66.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 3.5e-117 425.6 343 62.1
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 4.6e-117 425.2 343 62.1
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 6.0e-117 424.9 343 62.1
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 7.8e-117 424.5 352 62.2
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 7.8e-117 424.5 352 62.2
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 7.8e-117 424.5 352 62.2
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.0e-116 424.1 341 61.9
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.0e-116 424.1 320 64.7
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 6.6e-116 421.4 347 61.7
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 8.7e-116 421.0 334 63.8
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-115 420.6 320 65.0
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 1.9e-115 419.9 334 64.1
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 3.3e-115 419.1 347 62.2
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 3.3e-115 419.1 347 62.2
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.3e-115 419.1 348 60.9
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 5.6e-115 418.3 349 62.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 5.6e-115 418.3 349 62.2
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 5.6e-115 418.3 349 62.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 7.3e-115 417.9 339 63.4
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.6e-114 416.8 333 64.3
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 3.6e-114 415.6 340 62.4
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 4.8e-114 415.2 344 61.3
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.8e-114 415.2 301 69.1
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.8e-114 415.2 345 61.4
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 8.1e-114 414.5 337 61.1
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.1e-113 414.1 347 62.0
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.4e-113 413.7 333 60.4
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.4e-113 413.7 314 65.3
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.4e-113 413.7 331 62.5
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.8e-113 413.3 352 61.6
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 1.8e-113 413.3 330 64.2
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.8e-113 413.3 338 62.4
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 4.0e-113 412.1 325 64.6
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.0e-113 412.1 333 64.0
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 9.0e-113 411.0 350 60.9
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 9.0e-113 411.0 319 63.0
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.2e-112 410.6 338 62.1
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 2.0e-112 409.8 338 62.1
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.6e-112 409.5 344 60.5
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 4.4e-112 408.7 340 62.1
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.4e-112 408.7 342 61.1
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 4.4e-112 408.7 343 60.3
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 5.8e-112 408.3 337 62.6
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.8e-112 408.3 323 62.8
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 4.9e-111 405.2 338 60.9
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.4e-111 404.8 338 61.2
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 8.4e-111 404.4 339 60.8
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.4e-110 402.9 316 63.6
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 2.4e-110 402.9 355 60.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.2e-110 402.5 338 60.1
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 4.2e-110 402.1 345 60.6
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 5.4e-110 401.7 333 61.6
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 5.4e-110 401.7 336 60.7
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.1e-109 399.8 335 62.1
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.1e-109 399.8 345 58.8
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 2.1e-109 399.8 353 60.9
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 2.1e-109 399.8 353 60.9
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.1e-109 399.8 320 62.5
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.7e-109 399.4 338 59.8
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 6.0e-109 398.3 333 61.9
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 3.9e-108 395.6 323 61.3
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 1.1e-107 394.0 346 57.5
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.4e-107 391.3 324 61.1
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 9.6e-107 391.0 346 58.1
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.3e-106 390.6 349 59.9
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.8e-106 389.4 317 61.5
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 3.6e-106 389.0 349 59.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 6.2e-106 388.3 268 70.1
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.1e-105 387.5 338 58.9
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.4e-105 387.1 338 58.6
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.4e-105 386.3 335 58.5
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 6.9e-105 384.8 346 59.0
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 9.0e-105 384.4 346 58.4
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.2e-104 384.0 342 59.9
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.2e-104 384.0 344 58.4
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 3.4e-104 382.5 343 56.9
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 4.5e-104 382.1 329 60.2
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 6.0e-101 371.7 343 54.8
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 6.0e-101 371.7 343 54.8
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 3.9e-100 369.0 317 58.7
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 6.7e-100 368.2 341 54.5
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.5e-99 367.1 340 55.6
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.5e-99 367.1 336 56.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 7.4e-99 364.8 277 66.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 6.2e-98 361.7 325 56.3
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 6.9e-97 358.2 278 64.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 2.6e-96 356.3 338 54.4
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.4e-96 355.9 343 56.0
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.8e-96 355.1 318 55.7
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.6e-96 354.8 319 57.4
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.3e-95 354.0 327 53.2
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 6.5e-95 351.7 340 54.1
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.9e-93 344.7 337 54.3
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 2.3e-92 343.2 308 57.5
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 1.1e-91 340.9 189 87.8
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.9e-91 340.1 330 55.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.9e-91 340.1 191 88.0
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 5.7e-91 338.6 319 55.5
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.0e-88 330.1 255 64.3
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 2.6e-88 329.7 342 50.9
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 3.8e-87 325.9 339 52.2
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.9e-86 323.6 341 47.2
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 6.1e-85 318.5 318 51.3
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 3.9e-84 315.8 336 47.0
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.5e-83 313.2 252 60.7
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.3e-83 312.8 323 48.9
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 5.7e-83 312.0 281 57.7
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 7.4e-83 311.6 315 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 9.7e-83 311.2 333 47.7
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.3e-82 310.8 330 50.3
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 2.2e-82 310.1 314 46.8
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.8e-82 309.7 323 48.6
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 8.2e-82 308.1 320 47.8
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 9.0e-81 304.7 333 47.7
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-80 303.9 319 50.2
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 1.5e-80 303.9 324 48.1
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 5.9e-80 302.0 325 47.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 5.9e-80 302.0 325 47.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.3e-79 300.8 407 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 8.5e-79 298.1 320 48.1
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.5e-78 296.6 335 43.9
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 4.2e-78 295.8 231 63.2
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.4e-73 280.0 274 51.5
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.2e-71 273.5 179 70.4
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.8e-71 272.7 189 69.8
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.4e-70 270.8 262 55.7
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.1e-69 266.9 223 58.7
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.6e-69 266.2 189 67.2
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.1e-65 254.6 190 64.2
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.1e-65 253.1 184 67.4
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 4.5e-64 249.2 345 42.3
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 8.0e-61 238.4 190 60.5
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.2e-58 230.3 182 63.2
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 7.5e-51 205.3 339 36.3
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 2.8e-50 203.4 161 65.2
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-49 201.1 328 36.9
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 1.8e-49 200.7 227 53.7
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 7.7e-48 195.3 224 50.0
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 3.6e-37 159.8 161 53.4
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 4.7e-37 159.5 172 48.8
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 7.0e-33 145.6 168 51.2
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 7.8e-32 142.1 104 68.3
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 3.0e-31 140.2 337 31.5
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 6.6e-31 139.0 92 71.7
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 4.7e-29 132.9 99 65.7
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 8.0e-29 132.1 89 69.7
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 8.3e-26 122.1 77 75.3
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-19 101.7 76 60.5
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 9.9e-19 98.6 81 55.6
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 9.9e-19 98.6 80 58.8
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-18 96.3 75 65.3
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 4.3e-14 83.2 57 66.7
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 4.7e-13 79.7 118 41.5
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 3.1e-12 77.0 73 56.2
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 6.8e-12 75.9 48 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.3e-07 61.6 80 43.8
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 4.3e-06 56.6 54 51.9


User provided reference genes

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