Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.1e-244 848.6 417 100.0
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.9e-229 798.9 417 94.7
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 8.5e-198 693.7 418 81.8
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 5.7e-194 681.0 354 94.9
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.8e-190 668.3 420 79.0
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.8e-184 649.4 420 77.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.4e-176 623.2 420 75.0
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.8e-163 579.7 421 69.1
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.8e-163 579.7 421 69.8
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 4.4e-162 575.1 421 69.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.7e-161 572.0 421 69.8
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 6.3e-161 571.2 418 67.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 7.7e-159 564.3 421 68.6
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.0e-158 563.9 421 69.1
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-158 563.5 421 67.2
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.7e-158 563.1 421 68.2
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.1e-157 560.5 421 68.2
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.1e-157 560.5 421 68.2
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.9e-157 559.7 421 66.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 4.3e-157 558.5 421 66.0
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 7.3e-157 557.8 421 65.3
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.1e-156 556.2 421 67.7
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 3.0e-155 552.4 421 67.2
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 4.0e-155 552.0 421 66.5
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.4e-154 548.9 419 66.3
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 4.4e-154 548.5 421 66.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 4.4e-154 548.5 421 66.5
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.9e-153 545.8 421 65.8
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 4.9e-153 545.0 421 65.3
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.4e-153 544.7 421 65.3
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 6.4e-153 544.7 421 65.3
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 8.3e-153 544.3 421 64.4
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.8e-152 543.1 421 65.1
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.8e-152 543.1 421 64.6
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.2e-152 542.3 421 65.8
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 5.4e-152 541.6 419 65.2
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 5.4e-152 541.6 421 65.6
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 7.0e-152 541.2 421 65.1
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.2e-151 540.4 420 64.5
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.2e-151 540.4 420 65.7
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.2e-151 540.4 421 65.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.7e-151 539.3 422 64.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.7e-151 539.3 421 64.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.7e-151 539.3 421 65.8
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.7e-151 539.3 420 65.5
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.5e-151 538.9 421 65.1
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.5e-151 538.9 424 63.9
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.6e-151 538.5 421 64.1
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 5.9e-151 538.1 420 64.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.0e-150 537.3 422 65.6
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.0e-150 537.3 421 65.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.7e-150 536.6 421 63.9
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.7e-150 536.6 421 62.9
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.7e-150 536.6 421 62.7
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.7e-150 536.6 421 64.8
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.0e-150 535.8 421 65.3
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.9e-150 535.4 425 63.5
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 5.0e-150 535.0 418 64.6
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 6.6e-150 534.6 420 64.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 6.6e-150 534.6 422 65.4
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 8.6e-150 534.3 425 63.3
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-149 533.5 421 64.6
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-149 533.5 421 64.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.5e-149 533.5 421 64.6
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-149 533.5 421 62.9
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.5e-149 533.5 412 66.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.5e-149 533.5 421 65.1
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.5e-149 532.7 421 64.1
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.5e-149 532.7 421 64.1
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 4.3e-149 531.9 421 64.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 5.6e-149 531.6 420 65.0
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 7.3e-149 531.2 422 64.7
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.6e-148 530.0 404 66.3
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.1e-148 529.6 425 63.5
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 4.7e-148 528.5 421 64.4
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.8e-147 526.6 421 63.7
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.3e-147 526.2 421 64.6
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 3.1e-147 525.8 422 64.0
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 3.1e-147 525.8 421 63.2
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 5.2e-147 525.0 422 64.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 8.9e-147 524.2 418 63.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 2.0e-146 523.1 421 62.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 5.8e-146 521.5 421 63.7
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 9.8e-146 520.8 417 63.1
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 6.4e-145 518.1 421 62.2
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.4e-144 516.9 421 62.7
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.2e-144 515.8 421 62.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.2e-144 515.8 422 62.1
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 7.0e-144 514.6 425 63.5
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.2e-143 513.8 426 61.0
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.3e-142 509.6 419 62.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 4.0e-139 498.8 418 59.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.7e-137 493.4 421 60.1
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 6.4e-137 491.5 421 59.6
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 6.4e-137 491.5 419 57.3
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.4e-136 490.3 423 61.5
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.4e-136 489.6 423 58.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 4.1e-136 488.8 420 60.0
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 7.1e-136 488.0 421 60.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.7e-135 486.1 420 59.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.3e-134 483.0 421 58.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 8.6e-134 481.1 421 59.9
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.5e-133 480.3 421 58.4
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.8e-132 476.1 425 56.7
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 6.2e-132 474.9 420 57.6
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.2e-130 470.7 421 57.5
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.0e-130 469.9 421 57.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.4e-130 468.8 421 57.2
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 4.4e-130 468.8 421 57.2
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 5.8e-130 468.4 419 55.1
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.9e-130 467.6 379 62.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 5.4e-128 461.8 419 55.8
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.6e-127 460.3 421 54.6
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 6.0e-127 458.4 420 56.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.5e-122 443.7 423 53.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 6.4e-121 438.3 402 54.2
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.7e-118 430.3 423 52.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 2.2e-105 386.7 402 49.3
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.5e-103 379.4 420 49.0
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 5.1e-102 375.6 251 73.7
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.8e-97 359.4 323 57.9
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 2.0e-90 337.0 282 59.9
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 3.3e-85 319.7 407 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.3e-84 317.8 375 45.6
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.8e-83 313.9 304 55.9
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.1e-80 304.7 302 52.6
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.5e-66 256.5 248 54.4
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.0e-61 240.7 302 44.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-55 220.3 266 47.7
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 3.2e-48 196.8 134 70.1
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.1e-40 171.8 161 55.3
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.0e-38 165.2 132 66.7
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-30 137.9 99 70.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-30 136.0 91 72.5
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-24 118.2 70 78.6
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 9.5e-24 115.5 74 74.3
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-23 113.2 70 77.1
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-22 109.4 70 75.7
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-22 109.4 70 75.7
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 2.2e-20 104.4 79 62.0
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 1.2e-15 88.6 424 24.8
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.6e-15 87.0 106 48.1
CSS0019661 Camellia sinensis var. sinensis HOM05D003488 ORTHO05D004214 1.2e-10 72.0 303 24.4
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 2.7e-10 70.9 313 24.3
Cc06_g05690 Coffea canephora HOM05D003488 ORTHO05D004214 6.0e-10 69.7 328 23.8
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 6.0e-10 69.7 359 24.2
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 6.0e-10 69.7 359 24.2
COL.COLO4_19885 Corchorus olitorius HOM05D003488 ORTHO05D004214 7.8e-10 69.3 356 24.2
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 7.8e-10 69.3 359 24.2
PSO170G6786 Papaver somniferum HOM05D000051 ORTHO05D000015 1.5e-08 65.1 235 26.8
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 3.3e-08 63.9 257 23.7
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 5.6e-08 63.2 314 23.9
Duzib168G1363 Durio zibethinus HOM05D003488 ORTHO05D004214 7.3e-08 62.8 303 24.1
DCAR_009443 Daucus carota HOM05D000312 ORTHO05D000221 3.6e-07 60.5 227 24.2
BraA10t42602Z Brassica rapa HOM05D000051 ORTHO05D000015 1.8e-06 58.2 270 23.0


User provided reference genes

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