Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023724 Solanum tuberosum HOM05D015445 ORTHO05D008750 8.9e-101 370.5 227 100.0
Solyc10g080140.2 Solanum lycopersicum HOM05D015445 ORTHO05D008750 9.6e-87 323.9 227 91.2
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 1.1e-71 273.9 162 93.8
Nitab4.5_0004587g0040 Nicotiana tabacum HOM05D015445 ORTHO05D025892 1.1e-50 204.1 217 63.1
Nitab4.5_0001509g0010 Nicotiana tabacum HOM05D015445 ORTHO05D025892 5.5e-50 201.8 217 63.6
PGSC0003DMG400023723 Solanum tuberosum HOM05D015445 ORTHO05D025892 2.5e-34 149.8 145 64.8
Solyc10g080170.1 Solanum lycopersicum HOM05D015445 ORTHO05D025892 6.8e-32 141.7 144 62.5
Sopen10g030780 Solanum pennellii HOM05D015445 ORTHO05D025892 2.6e-31 139.8 134 64.2
Peaxi162Scf00354g00210 Petunia axillaris HOM05D015445 ORTHO05D008750 1.9e-26 123.6 227 43.2
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 1.6e-20 104.0 157 48.4
Phvul.007G252900 Phaseolus vulgaris HOM05D007490 ORTHO05D008750 2.0e-20 103.6 238 37.0
Sopen04g007810 Solanum pennellii HOM05D007490 ORTHO05D008750 4.5e-20 102.4 282 36.5
Dinv39599 Davidia involucrata HOM05D007490 ORTHO05D008750 3.3e-18 96.3 226 39.8
VMungo0720G0884 Vigna mungo HOM05D007490 ORTHO05D008750 5.6e-18 95.5 235 36.6
Solyc04g015730.3 Solanum lycopersicum HOM05D007490 ORTHO05D008750 1.2e-17 94.4 276 35.5
Nitab4.5_0005611g0010 Nicotiana tabacum HOM05D007490 ORTHO05D008750 1.6e-17 94.0 253 40.7
Oeu033005.1 Olea europaea HOM05D007490 ORTHO05D008750 5.7e-15 85.5 230 36.1
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 1.3e-14 84.3 161 42.9
TAR636G1914 Trochodendron aralioides HOM05D007490 ORTHO05D008750 1.7e-14 84.0 167 40.7
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 2.9e-14 83.2 227 37.4
CiPaw.09G038000 Carya illinoinensis HOM05D007490 ORTHO05D008750 4.9e-14 82.4 241 38.2
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 1.8e-13 80.5 228 36.0
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 3.2e-13 79.7 228 37.7
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 3.2e-13 79.7 224 37.1
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 9.2e-13 78.2 223 34.1
Medtr0100s0190 Medicago truncatula HOM05D007490 ORTHO05D008750 5.9e-12 75.5 231 35.1
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 1.7e-11 73.9 224 35.3
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 1.7e-11 73.9 162 39.5
Lj5g0014197 Lotus japonicus HOM05D007490 ORTHO05D008750 1.7e-11 73.9 142 43.0
arahy.Tifrunner.gnm1.ann1.M65R33 Arachis hypogaea HOM05D007490 ORTHO05D008750 2.3e-11 73.6 252 31.3
Actinidia39227 Actinidia chinensis HOM05D007490 ORTHO05D008750 3.0e-11 73.2 230 38.3
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 3.0e-11 73.2 166 43.4
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 3.9e-11 72.8 225 32.9
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 5.0e-11 72.4 242 37.2
Actinidia09331 Actinidia chinensis HOM05D007490 ORTHO05D008750 1.1e-10 71.2 227 35.7
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 1.9e-10 70.5 162 38.9
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 2.5e-10 70.1 162 38.9
Psat6g119920 Pisum sativum HOM05D007490 ORTHO05D008750 2.5e-10 70.1 231 32.5
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 2.5e-10 70.1 244 32.8
CANSAT80G2830 Cannabis sativa HOM05D007490 ORTHO05D008750 3.3e-10 69.7 231 32.5
Migut.K00089 Erythranthe guttata HOM05D007490 ORTHO05D008750 3.3e-10 69.7 223 31.4
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 4.3e-10 69.3 234 35.5
Haze_19861 Corylus avellana HOM05D007490 ORTHO05D008750 5.6e-10 68.9 241 34.4
Cc06_g17080 Coffea canephora HOM05D007490 ORTHO05D008750 1.2e-09 67.8 171 37.4
Ca_26016_v3 Cicer arietinum L. HOM05D007490 ORTHO05D008750 2.8e-09 66.6 153 38.6
Rhsim03G0022200 Rhododendron simsii HOM05D007490 ORTHO05D008750 2.8e-09 66.6 183 38.8
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 3.6e-09 66.2 236 35.6
FvH4_6g23771 Fragaria vesca HOM05D007490 ORTHO05D008750 4.7e-09 65.9 161 37.3
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 4.7e-09 65.9 235 32.3
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 6.2e-09 65.5 136 41.2
Cpa.g.sc92.48 Carica papaya HOM05D007490 ORTHO05D008750 1.0e-08 64.7 224 35.3
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 1.4e-08 64.3 245 31.4
TPR.G10631 Trifolium pratense HOM05D007490 ORTHO05D008750 1.4e-08 64.3 244 30.7
arahy.Tifrunner.gnm1.ann1.QGQ977 Arachis hypogaea HOM05D007490 ORTHO05D008750 3.1e-08 63.2 141 35.5
SalBow3G0554 Salvia bowleyana HOM05D007490 ORTHO05D008750 3.1e-08 63.2 234 30.8
SGA_v2.0_scaffold94G28485 Striga asiatica HOM05D007490 ORTHO05D008750 4.0e-08 62.8 228 32.9
unitig_0.g2659 Utricularia gibba HOM05D007490 ORTHO05D008750 4.0e-08 62.8 225 31.1
Nn7g36272 Nelumbo nucifera HOM05D007490 ORTHO05D008750 8.9e-08 61.6 168 33.9
FAN02G3575 Fragaria x ananassa HOM05D007490 ORTHO05D008750 1.2e-07 61.2 162 35.8
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 2.0e-07 60.5 253 32.0
Potri.006G050900 Populus trichocarpa HOM05D007490 ORTHO05D008750 3.4e-07 59.7 175 35.4
AUR62024445 Chenopodium quinoa HOM05D007490 ORTHO05D008750 5.8e-07 58.9 42 71.4
AUR62026035 Chenopodium quinoa HOM05D007490 ORTHO05D008750 5.8e-07 58.9 42 71.4
ECA236G0950 Erigeron canadensis HOM05D007490 ORTHO05D008750 5.8e-07 58.9 238 31.1
Lalb_Chr21g0316471 Lupinus albus HOM05D007490 ORTHO05D008750 1.3e-06 57.8 94 44.7
CARHR167640 Cardamine hirsuta HOM05D007490 ORTHO05D008750 1.7e-06 57.4 229 34.1
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 2.2e-06 57.0 138 37.0
PGR004G2251 Punica granatum HOM05D007490 ORTHO05D008750 2.2e-06 57.0 166 34.9
Ah.04g151770 Amaranthus hybridus HOM05D007490 ORTHO05D008750 2.9e-06 56.6 239 29.7
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 4.9e-06 55.8 94 41.5
FAN14G3182 Fragaria x ananassa HOM05D007490 ORTHO05D008750 6.4e-06 55.5 100 38.0
Aqoxy3G01571 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 8.3e-06 55.1 40 65.0


User provided reference genes

Program Settings