Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 5.9e-191 671.0 416 100.0
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 2.5e-181 639.0 444 89.2
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 4.0e-163 578.6 395 90.9
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 3.8e-150 535.4 421 77.7
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.1e-149 533.9 421 77.9
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 1.2e-148 530.4 428 74.8
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 6.8e-139 498.0 424 63.4
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.7e-137 492.3 423 62.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 4.1e-136 488.8 423 62.9
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 5.4e-136 488.4 423 62.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 7.8e-135 484.6 423 61.0
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 5.0e-134 481.9 425 60.7
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.6e-132 476.9 422 62.3
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.4e-131 473.8 423 68.6
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 2.3e-131 473.0 417 61.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.3e-131 473.0 422 60.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.6e-130 469.5 400 63.0
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 4.9e-129 465.3 423 72.1
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 6.4e-129 464.9 418 62.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 8.3e-129 464.5 417 59.2
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.2e-128 462.6 419 60.1
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.1e-128 462.2 418 60.3
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 7.1e-128 461.5 423 59.6
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 9.2e-128 461.1 423 58.4
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.1e-127 459.9 419 59.9
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 2.7e-127 459.5 423 58.2
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 4.6e-127 458.8 301 77.1
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 6.0e-127 458.4 425 61.2
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 6.0e-127 458.4 425 58.6
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 2.3e-126 456.4 305 75.7
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 3.0e-126 456.1 423 58.4
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.6e-126 454.9 427 58.5
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.1e-125 454.1 419 58.9
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.5e-125 453.8 436 57.1
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 3.3e-125 452.6 422 59.2
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.1e-124 449.9 422 58.3
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 6.2e-124 448.4 419 58.9
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 8.1e-124 448.0 427 57.6
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.4e-123 447.2 302 74.2
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.8e-123 446.8 422 58.3
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.3e-123 446.4 421 57.5
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 4.0e-123 445.7 424 56.8
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 4.0e-123 445.7 424 57.8
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 5.2e-123 445.3 301 73.4
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.5e-122 443.7 424 57.8
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.0e-122 443.4 427 57.1
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 9.9e-122 441.0 448 58.9
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.7e-121 440.3 414 58.2
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 6.4e-121 438.3 422 55.9
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.4e-120 436.4 420 57.1
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 9.2e-120 434.5 420 57.4
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.6e-119 432.2 416 56.5
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 3.0e-118 429.5 299 73.9
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 1.9e-117 426.8 301 73.1
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 2.5e-117 426.4 301 71.8
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 3.3e-117 426.0 417 54.4
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 3.3e-117 426.0 435 54.5
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 7.3e-117 424.9 434 54.8
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 7.3e-117 424.9 409 56.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 9.6e-117 424.5 520 47.7
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.2e-116 424.1 301 72.1
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 6.2e-116 421.8 300 71.7
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.4e-115 420.6 308 67.5
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.1e-115 419.5 301 71.4
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 4.0e-115 419.1 301 70.8
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 4.0e-115 419.1 301 70.8
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 8.9e-115 417.9 301 71.8
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 8.9e-115 417.9 301 70.8
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 8.9e-115 417.9 301 70.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 8.9e-115 417.9 301 70.1
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.0e-114 416.8 301 70.8
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 5.8e-114 415.2 298 71.5
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 9.9e-114 414.5 440 53.2
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 3.8e-113 412.5 301 68.8
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 3.8e-113 412.5 423 53.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 8.4e-113 411.4 301 68.8
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 3.2e-112 409.5 422 62.8
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.6e-111 407.1 415 54.7
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.0e-110 404.4 301 67.8
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.5e-109 399.8 413 52.8
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 2.5e-109 399.8 416 52.9
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 3.3e-109 399.4 285 70.9
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.3e-108 397.5 298 67.1
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.1e-108 396.7 299 64.9
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 3.6e-108 396.0 438 52.1
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.8e-107 393.7 408 52.0
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 2.6e-106 389.8 415 52.3
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 2.6e-106 389.8 429 52.0
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 3.4e-106 389.4 293 68.6
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 3.4e-106 389.4 293 68.6
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 4.5e-106 389.0 427 51.5
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.9e-106 387.9 408 51.7
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.2e-104 382.5 374 55.6
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 9.3e-104 381.3 430 50.0
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.2e-103 380.9 429 52.2
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.7e-103 379.8 299 65.9
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.9e-102 375.9 408 51.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 5.1e-102 375.6 421 51.5
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 8.7e-102 374.8 281 68.7
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 4.3e-101 372.5 414 51.7
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 1.4e-99 367.5 425 50.8
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.4e-96 356.7 399 51.4
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.2e-96 356.3 399 51.1
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.2e-96 356.3 399 51.1
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.5e-96 355.5 399 51.1
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.5e-95 352.8 399 50.9
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 3.1e-91 339.7 299 58.2
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 4.0e-91 339.3 304 56.9
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.3e-89 334.3 298 59.1
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.6e-87 327.4 271 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 9.0e-83 311.6 332 49.7
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 8.7e-78 295.0 278 57.6
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.5e-77 294.3 297 51.2
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.8e-73 279.6 274 54.7
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 7.4e-61 238.8 301 45.8
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.4e-59 234.6 281 47.3
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.1e-55 220.7 279 45.5
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.7e-52 211.1 254 46.9
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 4.8e-52 209.5 153 70.6
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.1e-51 206.8 150 67.3
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.9e-49 200.3 144 71.5
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 7.2e-48 195.7 361 34.3
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.7e-44 183.3 129 71.3
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 8.6e-41 172.2 124 71.8
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.8e-37 158.7 116 68.1
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 9.2e-35 152.1 111 64.0
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.4e-27 127.5 79 79.7
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 4.7e-23 113.2 74 75.7
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.0e-18 97.8 146 41.8
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.2e-13 82.0 66 62.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.6e-10 71.6 336 21.1
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.9e-08 64.7 55 58.2
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.6e-07 61.6 50 62.0
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.6e-07 61.6 66 53.0


User provided reference genes

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