Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.5e-66 255.4 133 100.0
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.2e-51 205.7 133 77.4
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.9e-51 205.3 133 78.9
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 2.5e-50 202.2 127 78.7
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 2.5e-50 202.2 133 79.7
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 2.5e-50 202.2 133 79.7
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 7.2e-50 200.7 133 77.4
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 1.3e-46 189.9 133 71.4
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 3.1e-45 185.3 133 72.2
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 5.3e-45 184.5 133 69.9
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.2e-44 183.3 134 72.4
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.5e-44 183.0 134 70.9
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.5e-44 183.0 133 68.4
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 2.0e-44 182.6 134 70.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.6e-44 182.2 134 69.4
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 4.5e-44 181.4 133 71.4
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 5.9e-44 181.0 133 69.9
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 7.7e-44 180.6 133 69.2
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 69.9
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 66.2
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 5.0e-43 177.9 133 70.7
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 8.5e-43 177.2 133 67.7
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 8.5e-43 177.2 134 69.4
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 1.4e-42 176.4 134 67.2
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.4e-42 176.4 133 69.9
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.4e-42 176.4 134 70.1
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 1.4e-42 176.4 133 66.9
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 1.9e-42 176.0 133 69.9
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 1.9e-42 176.0 133 69.9
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 1.9e-42 176.0 133 68.4
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 1.9e-42 176.0 133 68.4
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 2.5e-42 175.6 133 69.9
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 3.2e-42 175.3 133 68.4
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.2e-42 175.3 134 69.4
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 4.2e-42 174.9 135 68.9
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 7.2e-42 174.1 133 68.4
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 9.4e-42 173.7 134 67.2
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 1.2e-41 173.3 133 68.4
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 2.1e-41 172.6 133 69.9
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 2.1e-41 172.6 133 68.4
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.1e-41 172.6 133 67.7
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 2.1e-41 172.6 132 65.2
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 2.7e-41 172.2 133 68.4
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 4.7e-41 171.4 133 69.9
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 6.1e-41 171.0 133 68.4
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 6.1e-41 171.0 133 66.2
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 6.1e-41 171.0 133 66.2
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 8.0e-41 170.6 124 71.8
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 8.0e-41 170.6 134 67.2
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 8.0e-41 170.6 133 68.4
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 1.0e-40 170.2 133 64.7
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.4e-40 169.9 133 67.7
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 1.8e-40 169.5 133 66.9
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 2.3e-40 169.1 137 65.0
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 3.0e-40 168.7 134 66.4
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 3.0e-40 168.7 133 66.9
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 3.0e-40 168.7 133 66.9
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.0e-40 168.7 134 68.7
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 68.4
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 66.2
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 66.2
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.9e-40 168.3 133 69.2
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 5.2e-40 167.9 134 67.2
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 6.7e-40 167.5 133 64.7
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.1e-39 166.8 135 64.4
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 1.1e-39 166.8 132 64.4
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-39 166.4 137 67.2
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-39 166.4 137 67.2
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-39 166.4 137 67.2
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-39 166.4 137 67.2
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-39 166.4 137 67.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.5e-39 166.4 134 70.1
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.0e-39 166.0 133 64.7
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 2.0e-39 166.0 137 67.9
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.0e-39 166.0 137 67.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.0e-39 166.0 134 67.2
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.6e-39 165.6 133 67.7
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 2.6e-39 165.6 134 63.4
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 2.6e-39 165.6 131 67.2
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 3.3e-39 165.2 133 64.7
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.3e-39 165.2 137 66.4
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 3.3e-39 165.2 134 69.4
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 4.4e-39 164.9 134 63.4
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 5.7e-39 164.5 137 67.2
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.7e-39 164.5 133 63.9
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.7e-38 161.8 128 68.8
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 4.8e-38 161.4 133 63.9
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 1.4e-37 159.8 134 63.4
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.4e-37 159.1 106 77.4
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.0e-37 157.5 135 65.2
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 9.1e-37 157.1 110 70.9
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-36 156.4 135 65.2
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 1.6e-36 156.4 133 63.9
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 2.0e-36 156.0 111 70.3
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 2.6e-36 155.6 133 60.9
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.7e-35 152.9 133 62.4
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 2.9e-35 152.1 119 66.4
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 5.0e-35 151.4 131 59.5
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 6.5e-35 151.0 134 61.2
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 6.5e-35 151.0 110 71.8
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 6.5e-35 151.0 133 64.7
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 6.5e-35 151.0 103 71.8
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 8.5e-35 150.6 133 60.9
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.5e-34 149.8 119 66.4
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 3.2e-34 148.7 106 70.8
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 4.2e-34 148.3 110 66.4
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 7.2e-34 147.5 120 60.8
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 2.7e-33 145.6 110 68.2
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 2.7e-33 145.6 110 68.2
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 2.7e-33 145.6 110 68.2
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 2.7e-33 145.6 110 68.2
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 8.0e-33 144.1 133 55.6
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 3.0e-32 142.1 133 58.6
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.5e-31 139.8 100 69.0
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 4.4e-31 138.3 92 71.7
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 5.7e-31 137.9 110 63.6
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.2e-30 136.0 124 58.1
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.7e-30 135.2 92 69.6
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 4.8e-30 134.8 92 69.6
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 6.3e-30 134.4 131 56.5
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 5.3e-29 131.3 109 59.6
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.5e-28 128.6 112 59.8
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-27 126.7 125 57.6
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 6.5e-27 124.4 134 53.0
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.6e-25 118.6 117 58.1
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.2e-23 113.6 109 56.0
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.4e-21 104.8 57 84.2
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.6e-20 103.2 106 52.8
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-19 100.1 93 63.4
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 2.3e-19 99.4 99 49.5
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.2e-17 93.6 92 52.2
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.6e-17 93.2 106 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 3.6e-17 92.0 90 48.9
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.2e-12 77.0 52 67.3
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 1.7e-11 73.2 99 39.4
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.9e-11 72.0 62 58.1
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 1.9e-10 69.7 69 58.0
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 4.3e-10 68.6 53 73.6
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.0e-07 59.7 80 51.2
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 5.8e-07 58.2 120 31.7


User provided reference genes

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