Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 0.0e+00 1239.6 644 100.0
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 0.0e+00 1151.3 645 93.6
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 0.0e+00 1083.9 645 89.9
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.6e-248 861.7 678 73.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 6.4e-245 850.9 691 70.9
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 4.0e-223 778.5 581 75.6
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.2e-213 746.1 588 73.5
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.0e-159 565.1 690 54.8
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.4e-153 546.2 714 52.7
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 6.4e-128 462.2 650 48.8
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.6e-113 413.7 612 47.2
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.1e-111 408.3 613 47.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.2e-94 351.7 715 39.9
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.6e-91 341.3 621 43.8
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 9.4e-87 325.5 771 37.4
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 2.0e-84 317.8 700 39.3
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 6.9e-82 309.3 689 40.2
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.2e-79 300.4 679 39.3
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 7.2e-79 299.3 750 35.7
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.2e-78 298.5 676 39.2
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-76 291.2 699 37.9
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 4.4e-76 290.0 695 38.1
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.2e-75 287.7 665 39.4
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 6.3e-75 286.2 710 36.3
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 1.8e-74 284.6 546 43.4
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 2.4e-74 284.3 734 37.3
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 5.3e-74 283.1 584 42.3
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 7.0e-74 282.7 696 36.8
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 7.0e-74 282.7 702 36.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 2.9e-72 277.3 646 39.5
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 3.8e-72 276.9 696 36.1
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 5.0e-72 276.6 710 36.8
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 8.5e-72 275.8 578 41.2
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.1e-71 275.4 589 40.7
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 9.4e-71 272.3 609 40.2
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.6e-70 270.4 740 35.9
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 4.7e-70 270.0 701 36.9
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.4e-69 268.5 588 41.0
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 1.8e-69 268.1 698 35.5
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.3e-69 267.7 737 36.1
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 6.7e-69 266.2 738 35.8
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 8.8e-69 265.8 458 43.7
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.1e-68 265.4 696 36.8
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.3e-68 263.8 628 36.6
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.3e-67 261.9 724 36.2
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 1.7e-67 261.5 584 40.9
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 6.3e-67 259.6 705 36.0
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 6.3e-67 259.6 651 38.2
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.8e-66 258.1 611 37.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.1e-66 257.3 711 35.2
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 5.3e-66 256.5 664 37.3
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 5.3e-66 256.5 607 35.6
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.6e-65 255.0 604 36.8
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.6e-65 255.0 686 35.0
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.6e-65 255.0 532 40.0
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.6e-65 254.2 542 41.0
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.6e-65 254.2 707 35.1
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 3.5e-65 253.8 627 36.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 2.9e-64 250.8 631 36.8
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.0e-64 250.0 771 32.8
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 6.5e-64 249.6 638 37.5
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.9e-63 248.1 665 34.4
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 3.2e-63 247.3 617 35.8
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 7.2e-63 246.1 630 37.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 2.7e-62 244.2 621 35.4
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 3.6e-62 243.8 612 35.9
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.2e-61 240.0 651 35.5
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.2e-60 238.8 764 33.6
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.8e-59 234.2 745 33.8
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 3.7e-59 233.8 687 34.6
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.1e-58 232.3 629 34.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 4.1e-58 230.3 575 37.0
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 7.0e-58 229.6 618 34.6
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.3e-56 225.3 773 33.1
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.1e-55 222.2 539 37.7
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.6e-54 217.2 610 33.8
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 8.0e-54 216.1 563 36.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 3.0e-53 214.2 511 36.6
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 2.8e-51 207.6 674 34.0
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.3e-51 206.5 692 32.7
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.2e-49 202.2 594 33.7
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 4.5e-49 200.3 679 32.7
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 3.0e-45 187.6 530 33.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.5e-44 185.3 630 33.5
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 3.4e-44 184.1 523 35.8
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 9.8e-44 182.6 299 45.8
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 8.3e-43 179.5 339 39.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.8e-42 178.3 563 32.1
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.8e-42 178.3 514 34.8
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.8e-42 178.3 517 34.8
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 4.6e-41 173.7 577 32.6
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 4.6e-41 173.7 839 29.2
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.0e-40 172.6 557 32.0
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 3.9e-40 170.6 578 31.5
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 5.0e-40 170.2 579 30.6
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 9.5e-39 166.0 605 29.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.6e-38 164.1 371 40.7
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 4.7e-38 163.7 582 30.6
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 4.7e-38 163.7 586 29.7
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 8.0e-38 162.9 600 30.5
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 8.9e-37 159.5 507 31.8
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 1.2e-36 159.1 570 29.6
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.5e-36 158.7 551 30.3
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 5.8e-36 156.8 526 30.2
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 9.8e-36 156.0 530 29.1
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 9.8e-36 156.0 530 29.1
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.7e-35 155.2 471 32.7
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 2.3e-32 144.8 278 41.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.5e-31 142.1 573 29.3
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.9e-31 141.7 582 29.0
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 3.3e-31 141.0 519 28.1
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 9.5e-31 139.4 573 29.1
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.8e-29 135.2 473 33.4
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.9e-26 125.2 400 32.2
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 6.0e-25 120.2 543 28.5
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 1.4e-21 109.0 421 29.0
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 6.8e-21 106.7 214 41.1
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 8.9e-21 106.3 315 35.6
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.0e-20 105.1 366 30.6
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 2.7e-17 94.7 280 35.4
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 7.8e-17 93.2 577 27.4
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.1e-16 90.5 363 29.8
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 5.2e-13 80.5 270 34.4
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 2.0e-12 78.6 363 28.7
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.3e-11 75.9 270 34.8
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.9e-11 74.7 136 39.0
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 4.9e-11 73.9 344 29.7
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 2.8e-06 58.2 60 58.3
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 4.8e-06 57.4 137 34.3
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 8.1e-06 56.6 85 42.4


User provided reference genes

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