Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.3e-66 257.3 267 100.0
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.0e-63 246.1 267 94.0
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 4.2e-49 199.1 267 88.0
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.7e-40 169.9 188 87.2
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.3e-26 124.4 155 87.1
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 5.0e-26 122.5 267 67.8
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.1e-25 121.3 204 61.3
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.2e-25 118.6 272 64.3
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.6e-24 117.5 275 67.3
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 2.7e-24 116.7 205 71.7
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.8e-23 114.0 200 57.0
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 2.3e-23 113.6 198 70.2
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 6.7e-23 112.1 268 59.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 6.7e-23 112.1 186 63.4
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 9.7e-22 108.2 128 60.2
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.7e-21 107.5 197 55.3
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.2e-21 107.1 191 63.4
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.2e-21 107.1 199 59.3
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 4.8e-21 105.9 200 70.0
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 6.3e-21 105.5 197 62.9
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 7.0e-20 102.1 265 59.2
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 9.1e-20 101.7 195 63.6
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 9.1e-20 101.7 203 66.0
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 4.5e-19 99.4 194 63.9
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 5.9e-19 99.0 192 66.1
CAN.G1156.44 Capsicum annuum HOM05D003347 ORTHO05D003821 7.7e-19 98.6 198 74.7
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 1.7e-18 97.4 115 71.3
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.7e-18 97.4 204 54.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.2e-18 97.1 213 54.9
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.2e-18 97.1 200 59.5
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 2.5e-17 93.6 190 68.9
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.2e-17 93.2 193 64.2
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 3.2e-17 93.2 106 68.9
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.2e-17 93.2 85 65.9
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 4.2e-17 92.8 155 67.1
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.2e-16 91.3 117 54.7
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-16 91.3 193 61.1
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 1.6e-16 90.9 156 60.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.6e-16 90.9 191 63.4
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.7e-16 90.1 203 59.1
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.4e-15 87.8 189 54.0
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-15 87.8 119 65.5
Peaxi162Scf00006g00507 Petunia axillaris HOM05D003347 ORTHO05D003821 1.4e-15 87.8 91 80.2
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.0e-15 86.7 115 53.0
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 4.0e-15 86.3 83 61.4
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.2e-15 85.9 225 57.3
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 8.8e-15 85.1 193 60.6
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.2e-14 84.7 273 52.0
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.5e-14 84.3 188 56.4
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.0e-14 84.0 187 55.1
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.6e-14 83.6 193 58.5
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.6e-14 83.6 116 58.6
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 2.6e-14 83.6 86 68.6
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 4.4e-14 82.8 183 55.7
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 4.4e-14 82.8 86 72.1
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.7e-14 82.4 86 70.9
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.3e-13 81.3 176 41.5
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.3e-13 81.3 204 49.5
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.3e-13 81.3 195 57.4
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 1.7e-13 80.9 168 72.6
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.2e-13 80.5 121 53.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.2e-13 80.5 179 51.4
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.8e-13 80.1 121 57.0
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 6.3e-13 79.0 192 58.3
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.1e-12 78.2 123 45.5
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.1e-12 78.2 120 63.3
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.4e-12 77.8 187 57.8
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.8e-12 77.4 193 58.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.4e-12 77.0 116 50.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 2.4e-12 77.0 187 57.8
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 3.1e-12 76.6 214 50.0
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 3.1e-12 76.6 85 52.9
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 4.1e-12 76.3 57 71.9
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 4.1e-12 76.3 72 63.9
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.1e-12 76.3 174 62.1
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 4.1e-12 76.3 75 73.3
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 7.0e-12 75.5 121 46.3
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 7.0e-12 75.5 195 44.6
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 7.0e-12 75.5 120 50.8
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 9.1e-12 75.1 85 67.1
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-11 74.7 191 56.0
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.0e-11 73.9 72 59.7
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.0e-11 73.9 203 48.8
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.0e-11 73.9 174 62.6
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.7e-11 73.6 199 54.3
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 3.5e-11 73.2 117 45.3
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 4.5e-11 72.8 202 57.9
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 4.5e-11 72.8 120 52.5
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 5.9e-11 72.4 119 51.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.0e-10 71.6 128 53.9
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.7e-10 70.9 120 56.7
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.2e-10 70.5 73 63.0
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.9e-10 70.1 92 54.3
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 2.9e-10 70.1 124 40.3
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 3.8e-10 69.7 195 54.9
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 3.8e-10 69.7 70 61.4
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.0e-10 69.3 96 53.1
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 8.5e-10 68.6 101 62.4
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 8.5e-10 68.6 75 56.0
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 8.5e-10 68.6 183 57.9
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.1e-09 68.2 199 49.7
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 1.1e-09 68.2 103 62.1
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.1e-09 68.2 107 56.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.1e-09 68.2 202 51.0
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.5e-09 67.8 114 58.8
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 1.5e-09 67.8 202 56.4
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.5e-09 67.8 74 56.8
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.9e-09 67.4 264 55.3
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 4.2e-09 66.2 79 51.9
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 5.5e-09 65.9 73 53.4
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.2e-09 65.5 73 57.5
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 9.4e-09 65.1 68 75.0
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.2e-08 64.7 188 50.0
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.2e-08 64.7 130 60.0
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.6e-08 64.3 205 50.7
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 3.6e-08 63.2 165 62.4
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 3.6e-08 63.2 77 51.9
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.7e-08 62.8 193 49.7
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 6.1e-08 62.4 116 54.3
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 8.0e-08 62.0 222 58.1
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.0e-07 61.6 75 66.7
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.0e-07 61.6 187 61.0
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.0e-07 61.6 174 58.6
THA.LOC104819474 Tarenaya hassleriana HOM05D012923 ORTHO05D014747 1.0e-07 61.6 93 54.8
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.0e-07 61.6 192 50.0
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.4e-07 61.2 117 48.7
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.4e-07 61.2 55 65.5
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.4e-07 61.2 167 55.1
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.4e-07 61.2 104 64.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 2.3e-07 60.5 189 49.7
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 2.3e-07 60.5 85 44.7
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 2.3e-07 60.5 85 44.7
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 3.0e-07 60.1 142 46.5
SHI11423 Sapria himalayana HOM05D003347 ORTHO05D003821 3.0e-07 60.1 70 72.9
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 3.0e-07 60.1 188 62.2
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 4.0e-07 59.7 74 47.3
AL6G23960 Arabidopsis lyrata HOM05D012923 ORTHO05D014747 5.2e-07 59.3 170 45.9
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 5.2e-07 59.3 75 65.3
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 5.2e-07 59.3 85 48.2
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 5.2e-07 59.3 73 63.0
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.2e-06 58.2 74 50.0
FvH4_1g25270 Fragaria vesca HOM05D003347 ORTHO05D003821 1.5e-06 57.8 66 60.6
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 4.4e-06 56.2 116 49.1
Cc07_g19150 Coffea canephora HOM05D003347 ORTHO05D003821 4.4e-06 56.2 288 60.4
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 5.7e-06 55.8 117 46.2
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 5.7e-06 55.8 82 58.5
AT5G13340 Arabidopsis thaliana HOM05D012923 ORTHO05D014747 7.5e-06 55.5 170 44.7
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 7.5e-06 55.5 75 52.0
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 9.8e-06 55.1 117 47.9


User provided reference genes

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