Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.9e-210 734.9 363 100.0
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 1.3e-189 666.4 362 90.6
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.3e-183 645.6 362 88.7
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 3.3e-158 562.0 378 77.0
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 6.3e-157 557.8 365 78.6
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 4.0e-143 511.9 364 74.2
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.5e-121 439.5 390 62.3
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 9.9e-118 427.6 309 65.7
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.3e-117 427.2 362 58.8
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 1.3e-117 427.2 313 66.1
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 6.4e-117 424.9 318 66.0
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 6.4e-117 424.9 318 70.8
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 8.3e-117 424.5 376 59.0
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 4.1e-116 422.2 289 67.5
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 5.4e-116 421.8 377 59.2
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 1.6e-115 420.2 289 69.6
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 2.1e-115 419.9 370 58.9
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 3.5e-115 419.1 345 60.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.0e-114 416.0 295 67.1
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 3.0e-114 416.0 363 59.0
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 3.0e-114 416.0 347 59.9
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.5e-113 413.7 367 58.0
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.5e-113 413.7 294 66.3
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 1.9e-113 413.3 323 61.6
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.9e-113 413.3 294 66.3
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 3.3e-113 412.5 288 67.0
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 4.3e-113 412.1 367 57.8
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 9.5e-113 411.0 289 68.2
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 9.5e-113 411.0 340 60.3
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 1.2e-112 410.6 295 67.1
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.6e-112 410.2 289 67.1
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 4.7e-112 408.7 295 65.8
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 1.1e-111 407.5 328 60.4
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.4e-111 406.4 360 58.9
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 5.2e-111 405.2 289 65.7
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.5e-110 403.7 289 66.8
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 1.5e-110 403.7 295 65.4
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 2.6e-110 402.9 347 58.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 3.4e-110 402.5 289 67.5
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 4.4e-110 402.1 345 58.3
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 4.4e-110 402.1 332 60.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 7.6e-110 401.4 289 64.7
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 7.6e-110 401.4 301 63.5
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.9e-109 399.4 327 60.6
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 4.9e-109 398.7 291 64.6
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 4.9e-109 398.7 289 65.1
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.4e-108 397.1 290 67.6
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 1.2e-107 394.0 290 66.2
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 4.6e-107 392.1 289 66.8
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 1.3e-106 390.6 265 70.2
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.7e-106 390.2 289 62.6
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.9e-106 389.0 316 58.2
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 3.9e-106 389.0 288 64.9
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 3.9e-106 389.0 342 58.2
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.5e-105 387.1 291 62.9
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.5e-105 386.3 316 60.8
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 4.3e-105 385.6 314 60.5
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 4.3e-105 385.6 314 60.5
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 5.6e-105 385.2 289 63.0
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 9.6e-105 384.4 312 61.2
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.2e-104 384.0 318 59.7
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.2e-104 384.0 318 59.7
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.1e-104 383.3 308 59.4
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 8.1e-104 381.3 302 61.9
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.8e-103 380.2 296 61.8
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 4.0e-103 379.0 348 55.7
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 1.5e-102 377.1 304 60.2
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 2.0e-102 376.7 296 62.8
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 2.6e-102 376.3 294 61.6
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 2.6e-102 376.3 289 59.9
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 2.2e-101 373.2 296 60.8
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 2.9e-101 372.9 368 53.0
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.9e-101 372.9 290 60.7
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.9e-101 372.1 301 57.8
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 1.4e-100 370.5 249 68.7
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.4e-100 370.5 320 60.0
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 2.4e-100 369.8 290 61.0
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 4.6e-99 365.5 289 61.6
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 7.8e-99 364.8 288 62.2
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.9e-97 360.1 258 67.4
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 2.8e-96 356.3 289 58.8
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.1e-95 352.8 265 61.5
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 4.0e-95 352.4 290 59.3
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 5.3e-95 352.1 289 57.8
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 6.9e-95 351.7 289 58.8
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.2e-94 350.9 296 57.4
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 1.5e-94 350.5 321 56.7
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 1.5e-94 350.5 297 57.6
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 3.4e-94 349.4 320 57.5
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 5.8e-94 348.6 289 57.8
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.7e-93 347.1 249 65.9
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.2e-93 346.7 249 65.5
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 2.9e-93 346.3 290 58.6
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 6.7e-90 335.1 297 53.5
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 6.7e-90 335.1 231 68.0
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 4.3e-89 332.4 289 56.7
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 7.6e-86 321.6 250 64.0
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 1.1e-84 317.8 288 56.6
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.4e-84 316.6 250 62.8
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 1.8e-82 310.5 249 60.2
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 1.5e-81 307.4 235 64.7
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.3e-81 306.2 249 66.7
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 1.1e-73 281.2 292 46.6
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.2e-72 276.9 204 65.7
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 2.5e-65 253.4 312 44.2
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.7e-65 252.3 288 45.5
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 9.7e-65 251.5 255 51.8
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 1.4e-58 231.1 222 53.2
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 5.7e-57 225.7 347 38.3
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.2e-41 174.9 288 34.0
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 7.5e-41 172.2 297 37.4
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.4e-39 167.9 178 54.5
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 8.5e-37 158.7 124 58.1
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.4e-26 124.8 369 26.8
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 2.0e-22 110.9 270 28.9
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 9.5e-20 102.1 91 56.0
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.5e-12 77.4 83 45.8
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.3e-10 70.9 91 41.8
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 5.2e-10 69.7 53 69.8
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.9e-08 63.9 101 36.6
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.7e-08 63.5 28 100.0
RcHm_v2.0_Chr2g0117431 Rosa chinensis HOM05D006367 ORTHO05D007942 7.8e-06 55.8 103 40.8


User provided reference genes

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