Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.6e-150 536.2 304 100.0
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 3.2e-146 521.9 304 97.7
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 4.3e-143 511.5 304 96.1
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 2.6e-135 485.7 304 87.8
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 9.4e-130 467.2 302 83.1
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.8e-126 454.9 316 82.0
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.4e-125 453.4 326 81.0
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 2.3e-104 382.9 304 69.4
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.2e-102 376.3 310 70.6
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 2.7e-100 369.4 304 67.1
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.5e-100 369.0 306 71.2
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 2.3e-99 366.3 308 67.5
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 4.3e-98 362.1 306 66.7
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 4.7e-97 358.6 307 70.0
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.3e-96 356.3 306 67.0
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 2.3e-96 356.3 308 70.8
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 6.8e-96 354.8 296 69.9
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 1.2e-95 354.0 309 64.4
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.5e-95 353.6 310 65.5
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.0e-95 353.2 306 66.7
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 2.0e-95 353.2 305 66.9
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 7.5e-95 351.3 310 63.9
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 9.8e-95 350.9 309 68.0
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.3e-94 350.5 313 67.7
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 2.9e-94 349.4 309 64.7
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 3.7e-94 349.0 332 61.1
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 4.9e-94 348.6 334 61.1
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 6.4e-94 348.2 308 68.5
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.4e-93 347.1 309 67.3
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.9e-93 346.7 323 64.1
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.4e-93 346.3 309 67.0
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 3.2e-93 345.9 305 64.3
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 3.2e-93 345.9 336 62.5
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 5.4e-93 345.1 308 66.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.6e-92 343.6 309 66.0
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.6e-92 343.6 309 62.1
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 4.6e-92 342.0 310 63.5
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.3e-91 340.5 314 63.4
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 3.0e-91 339.3 310 67.7
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 3.9e-91 339.0 329 66.0
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 6.6e-91 338.2 309 64.4
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.1e-90 337.4 283 67.1
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.5e-90 337.0 310 65.8
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 9.5e-90 334.3 308 60.7
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 9.5e-90 334.3 321 60.7
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.6e-89 333.6 248 71.0
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 2.1e-89 333.2 305 67.2
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 6.2e-89 331.6 314 64.3
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.1e-88 330.9 273 69.2
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.4e-88 330.5 231 74.5
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.8e-88 330.1 319 61.4
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 4.0e-88 328.9 219 78.1
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 5.2e-88 328.6 233 71.7
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 6.8e-88 328.2 305 60.3
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.2e-87 327.4 306 61.1
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 2.6e-87 326.2 321 61.1
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 5.8e-87 325.1 326 58.3
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 2.2e-86 323.2 313 62.0
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.9e-85 320.1 311 60.5
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.4e-85 319.7 309 65.0
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.4e-85 319.7 263 70.0
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.6e-84 317.0 312 60.3
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.3e-83 313.9 323 57.0
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.3e-83 313.9 263 62.4
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.9e-83 312.4 320 55.3
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.1e-83 312.0 367 53.4
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.5e-82 309.7 319 58.3
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 5.6e-82 308.5 318 55.7
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 7.3e-82 308.1 304 62.2
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.2e-81 307.4 304 62.8
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.1e-80 304.3 306 58.5
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.8e-80 303.5 321 57.0
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 5.2e-80 302.0 263 61.6
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 1.5e-79 300.4 324 60.8
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 1.5e-79 300.4 324 60.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.6e-79 299.7 239 65.7
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 3.4e-79 299.3 321 56.4
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 5.8e-79 298.5 305 56.7
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 2.9e-78 296.2 318 56.6
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 2.9e-78 296.2 311 61.4
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 3.7e-78 295.8 261 60.9
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 1.1e-77 294.3 295 60.3
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.9e-77 293.5 305 56.4
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 7.1e-77 291.6 308 61.7
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 9.2e-77 291.2 234 65.4
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 1.2e-76 290.8 340 53.2
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.6e-76 290.4 217 68.2
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.7e-76 289.7 262 58.8
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 3.5e-76 289.3 234 65.0
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 5.1e-75 285.4 253 60.5
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.9e-74 283.5 259 58.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 2.1e-73 280.0 329 52.6
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.1e-73 280.0 329 52.6
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.1e-73 280.0 272 59.2
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 6.2e-73 278.5 311 52.1
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.5e-71 273.9 299 55.9
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 3.4e-71 272.7 252 58.3
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 2.9e-70 269.6 308 53.2
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 6.4e-70 268.5 339 54.3
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 8.4e-70 268.1 303 58.7
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 1.1e-69 267.7 217 66.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.9e-69 266.9 305 59.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.4e-69 266.5 289 59.9
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 4.6e-68 262.3 307 53.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.3e-67 260.8 300 58.3
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 3.9e-67 259.2 491 40.7
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 6.6e-67 258.5 216 64.4
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.1e-66 257.7 325 52.3
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.5e-66 256.5 200 64.0
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-65 254.2 325 51.7
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 3.1e-64 249.6 304 50.7
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 5.3e-64 248.8 250 56.4
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.2e-60 237.7 173 71.1
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.0e-60 235.3 452 38.9
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.0e-60 235.3 452 38.9
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 3.3e-58 229.6 295 48.5
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 5.6e-58 228.8 233 52.8
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 9.6e-58 228.0 226 56.2
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 2.8e-57 226.5 171 65.5
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 9.9e-55 218.0 237 54.4
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.0e-52 208.8 119 87.4
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 5.6e-50 202.2 245 51.0
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.7e-46 190.7 102 89.2
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 2.1e-44 183.7 204 52.9
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.3e-35 153.7 161 46.0
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 9.0e-32 141.7 206 52.9
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.6e-28 129.8 67 94.0
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 5.1e-27 125.9 157 38.9
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-25 121.3 74 83.8
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 3.4e-23 113.2 69 85.5
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.0e-22 111.7 64 81.2
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.8e-19 100.9 175 44.0
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 5.1e-19 99.4 200 39.5
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 7.4e-18 95.5 143 44.8
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 5.9e-15 85.9 47 85.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.7e-14 84.3 51 74.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 3.0e-11 73.6 65 52.3
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.7e-09 67.8 243 32.1
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.1e-08 65.1 89 47.2
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.4e-08 63.9 138 26.8
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 4.1e-08 63.2 52 63.5
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 2.2e-06 57.4 51 52.9


User provided reference genes

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