Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.7e-194 681.8 344 100.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.8e-162 575.5 400 77.8
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.5e-160 569.7 406 75.1
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 2.4e-158 562.4 404 74.8
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.0e-137 491.9 382 71.7
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.6e-109 399.1 399 55.4
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-108 397.1 398 53.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 3.0e-108 396.0 398 53.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.1e-108 395.2 398 53.3
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 8.8e-108 394.4 390 54.6
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.5e-107 392.9 397 54.9
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.7e-107 391.7 390 54.4
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 7.4e-107 391.3 390 54.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.1e-105 387.5 398 54.3
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.4e-105 386.3 399 53.1
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 3.1e-105 386.0 415 53.3
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 5.3e-105 385.2 399 53.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 5.3e-105 385.2 399 53.1
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 6.9e-105 384.8 397 54.9
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.2e-104 384.0 399 54.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.0e-104 383.3 399 53.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.4e-104 382.5 387 54.3
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.9e-104 381.7 397 52.4
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 7.7e-104 381.3 397 52.4
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 7.7e-104 381.3 393 53.2
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.7e-103 380.2 381 53.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.2e-103 379.8 394 52.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.8e-103 379.0 399 51.1
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.8e-103 379.0 397 51.9
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 8.5e-103 377.9 399 52.9
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.4e-102 377.1 386 53.4
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 3.2e-102 375.9 406 52.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.2e-102 375.6 401 51.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.1e-101 373.2 391 52.4
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.7e-101 372.9 385 51.9
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.7e-101 372.9 408 50.7
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.7e-101 372.1 398 53.5
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.9e-101 371.3 386 52.6
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.0e-100 370.9 397 51.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.0e-100 370.9 391 51.7
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.4e-100 370.5 412 50.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 6.7e-100 368.2 392 50.3
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.8e-100 367.9 396 52.8
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 8.8e-100 367.9 396 51.5
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.6e-99 366.3 399 51.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.3e-99 365.9 403 49.6
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 7.4e-99 364.8 398 50.5
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.7e-99 364.4 399 49.6
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 9.7e-99 364.4 403 50.1
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.7e-98 363.6 375 52.3
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 6.3e-98 361.7 401 49.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 8.2e-98 361.3 387 50.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 8.2e-98 361.3 398 50.3
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.8e-97 360.1 386 51.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.4e-97 359.8 365 54.8
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.1e-97 359.4 390 50.5
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.1e-97 359.0 396 50.3
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 4.1e-97 359.0 401 49.6
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 7.0e-97 358.2 398 51.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 7.0e-97 358.2 391 50.6
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 7.0e-97 358.2 393 49.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 9.1e-97 357.8 391 50.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 9.1e-97 357.8 437 46.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 9.1e-97 357.8 391 50.6
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.2e-96 357.5 391 49.9
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-96 357.1 392 49.7
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.6e-96 357.1 392 49.5
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.6e-96 357.1 386 51.3
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-96 356.7 392 49.7
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.6e-96 356.3 399 49.1
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.6e-96 356.3 383 50.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 3.5e-96 355.9 385 50.9
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.5e-96 355.9 402 48.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 4.5e-96 355.5 392 49.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 5.9e-96 355.1 390 51.0
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.0e-95 354.4 392 49.2
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.0e-95 354.4 398 49.7
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.0e-95 354.4 398 49.7
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.0e-95 354.4 416 48.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.7e-95 353.6 391 50.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-95 353.6 392 49.5
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.9e-95 352.8 391 49.6
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.8e-95 352.4 395 48.6
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.8e-95 352.4 391 50.1
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 6.5e-95 351.7 400 49.8
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.5e-95 351.3 382 50.8
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 8.5e-95 351.3 405 49.1
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-94 350.9 393 49.4
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.1e-94 350.9 395 49.1
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.1e-94 350.9 391 49.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.5e-94 350.5 394 48.5
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.5e-94 349.7 406 48.5
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.2e-94 349.0 394 48.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 5.5e-94 348.6 393 49.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 5.5e-94 348.6 395 48.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 7.2e-94 348.2 393 49.9
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-93 347.4 389 49.1
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-93 347.4 389 49.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.6e-93 347.1 393 49.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.6e-93 347.1 393 49.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.6e-93 347.1 389 49.4
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-93 346.7 393 49.6
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.7e-93 346.3 396 48.0
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 3.6e-93 345.9 419 47.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.6e-93 345.9 393 49.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.6e-93 345.9 391 48.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 3.6e-93 345.9 387 49.4
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 8.0e-93 344.7 394 48.7
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.0e-92 344.4 419 47.3
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.0e-92 344.4 394 48.5
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.0e-92 344.4 388 49.0
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.4e-92 344.0 394 48.2
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.8e-92 343.6 400 47.8
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.8e-92 343.6 387 48.3
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.3e-92 343.2 400 48.2
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 3.0e-92 342.8 396 47.5
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 4.0e-92 342.4 394 48.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 6.7e-92 341.7 415 46.7
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.3e-90 337.4 375 49.9
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-88 330.9 407 45.9
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.5e-88 329.3 323 54.5
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.6e-85 319.3 432 44.4
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.7e-80 303.1 328 51.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 8.5e-79 298.1 397 42.6
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.9e-78 297.0 383 44.1
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.8e-74 283.1 353 46.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.4e-73 280.8 381 42.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 4.1e-73 279.3 383 42.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.4e-67 259.6 388 42.8
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.7e-66 257.3 373 44.0
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.6e-59 233.4 272 47.8
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 7.0e-57 225.3 265 47.2
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.3e-55 221.1 256 49.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.7e-55 220.7 259 49.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.0e-47 194.9 212 50.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.1e-41 174.9 179 52.0
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.3e-39 167.9 218 43.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.4e-33 146.0 158 48.7
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.2e-32 144.8 134 55.2
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.5e-32 143.3 117 58.1
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.6e-29 133.3 149 51.0
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 6.2e-29 132.5 115 56.5
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.2e-25 120.2 94 59.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.3e-22 109.8 158 44.3
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.4e-20 104.0 121 50.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.0e-20 103.2 104 50.0
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.7e-18 97.8 133 47.4
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.9e-18 97.1 78 61.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.2e-17 93.6 73 60.3
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.2e-16 91.7 98 50.0
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.6e-14 82.8 60 68.3
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 6.5e-10 69.3 195 34.4
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.3e-07 60.8 77 46.8


User provided reference genes

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