Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.1e-119 433.3 222 100.0
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 2.1e-30 136.7 87 81.6
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 3.1e-29 132.9 87 79.3
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 5.2e-29 132.1 87 79.3
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 1.5e-28 130.6 87 77.0
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 8.4e-27 124.8 87 73.6
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.2e-25 120.9 87 73.6
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.0e-24 117.9 87 70.1
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 5.4e-18 95.5 155 39.4
PGSC0003DMG400044984 Solanum tuberosum HOM05D008450 ORTHO05D007977 6.0e-17 92.0 85 56.5
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.0e-16 89.7 84 57.1
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.0e-16 89.7 85 52.9
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 3.9e-16 89.4 97 48.5
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 3.3e-15 86.3 125 42.4
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 4.3e-15 85.9 91 51.6
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 4.3e-15 85.9 112 43.8
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 7.3e-15 85.1 80 53.8
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.3e-14 84.3 80 52.5
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 1.6e-14 84.0 73 54.8
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.1e-14 83.6 127 40.2
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.8e-14 83.2 85 48.2
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 2.8e-14 83.2 80 50.0
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.8e-14 83.2 84 46.4
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 3.6e-14 82.8 96 45.8
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 3.6e-14 82.8 81 50.6
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 4.8e-14 82.4 126 38.1
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 4.8e-14 82.4 82 46.3
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 6.2e-14 82.0 126 39.7
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 8.1e-14 81.6 137 37.2
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.4e-13 80.9 129 41.1
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.4e-13 80.9 85 48.2
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 1.8e-13 80.5 96 44.8
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.8e-13 80.5 79 50.6
PGSC0003DMG400040206 Solanum tuberosum HOM05D000014 ORTHO05D007977 1.8e-13 80.5 65 61.5
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 2.4e-13 80.1 129 40.3
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.1e-13 79.7 129 41.1
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 3.1e-13 79.7 80 48.8
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 4.0e-13 79.3 129 38.0
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 4.0e-13 79.3 80 48.8
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 4.0e-13 79.3 85 50.6
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 5.3e-13 79.0 83 45.8
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 5.3e-13 79.0 129 41.1
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.3e-13 79.0 129 41.1
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 6.9e-13 78.6 133 37.6
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 6.9e-13 78.6 129 38.0
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 1.2e-12 77.8 81 48.1
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.2e-12 77.8 96 45.8
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.2e-12 77.8 116 40.5
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.5e-12 77.4 85 44.7
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.5e-12 77.4 128 40.6
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.0e-12 77.0 82 46.3
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 2.0e-12 77.0 97 44.3
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 2.0e-12 77.0 78 52.6
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 2.6e-12 76.6 120 41.7
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 3.4e-12 76.3 85 44.7
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.4e-12 76.3 96 44.8
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 4.5e-12 75.9 137 36.5
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 4.5e-12 75.9 81 46.9
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 7.6e-12 75.1 85 42.4
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 9.9e-12 74.7 96 43.8
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 9.9e-12 74.7 97 44.3
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.3e-11 74.3 112 35.7
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.3e-11 74.3 74 50.0
PGSC0003DMG400040960 Solanum tuberosum HOM05D008450 ORTHO05D007977 1.3e-11 74.3 45 77.8
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.7e-11 73.9 77 44.2
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 2.2e-11 73.6 102 42.2
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 2.9e-11 73.2 134 32.1
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.9e-11 72.4 81 39.5
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 8.4e-11 71.6 127 31.5
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 8.4e-11 71.6 156 35.3
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.4e-10 70.9 142 36.6
PGSC0003DMG400043606 Solanum tuberosum HOM05D008450 ORTHO05D007977 1.4e-10 70.9 46 76.1
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 1.9e-10 70.5 112 34.8
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 1.9e-10 70.5 112 34.8
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.9e-10 70.5 112 34.8
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.9e-10 70.5 112 34.8
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.9e-10 70.5 72 48.6
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.9e-10 70.5 109 35.8
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 3.2e-10 69.7 112 34.8
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 4.2e-10 69.3 97 43.3
PGSC0003DMG400043039 Solanum tuberosum HOM05D008450 ORTHO05D007977 4.2e-10 69.3 46 76.1
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 5.4e-10 68.9 88 38.6
PGSC0003DMG400038666 Solanum tuberosum HOM05D000303 ORTHO05D000570 5.4e-10 68.9 46 69.6
PGSC0003DMG400043690 Solanum tuberosum HOM05D008450 ORTHO05D007977 5.4e-10 68.9 46 71.7
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 7.1e-10 68.6 88 38.6
PGSC0003DMG400044728 Solanum tuberosum HOM05D008450 ORTHO05D007977 7.1e-10 68.6 43 76.7
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 9.3e-10 68.2 106 37.7
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 9.3e-10 68.2 125 35.2
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.2e-09 67.8 133 32.3
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-09 67.8 85 40.0
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.2e-09 67.8 85 40.0
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.2e-09 67.8 102 40.2
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.1e-09 67.0 97 38.1
PGSC0003DMG400011600 Solanum tuberosum HOM05D008172 ORTHO05D007977 2.1e-09 67.0 45 73.3
PGSC0003DMG400038054 Solanum tuberosum HOM05D008450 ORTHO05D007977 2.1e-09 67.0 46 71.7
PGSC0003DMG400044204 Solanum tuberosum HOM05D003308 ORTHO05D007977 2.1e-09 67.0 46 69.6
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.7e-09 66.6 85 41.2
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 3.5e-09 66.2 81 42.0
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 4.6e-09 65.9 104 41.3
PGSC0003DMG400036353 Solanum tuberosum HOM05D008450 ORTHO05D007977 6.0e-09 65.5 44 72.7
PGSC0003DMG400042366 Solanum tuberosum HOM05D008450 ORTHO05D007977 7.9e-09 65.1 46 71.7
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.3e-08 64.3 134 29.9
PGSC0003DMG400036784 Solanum tuberosum HOM05D008450 ORTHO05D007977 1.3e-08 64.3 43 72.1
PGSC0003DMG400042403 Solanum tuberosum HOM05D008450 ORTHO05D007977 1.3e-08 64.3 47 70.2
PGSC0003DMG400038583 Solanum tuberosum HOM05D008450 ORTHO05D007977 2.3e-08 63.5 46 69.6
PGSC0003DMG400045872 Solanum tuberosum HOM05D008450 ORTHO05D003926 2.3e-08 63.5 53 60.4
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.0e-08 63.2 81 43.2
PGSC0003DMG400045552 Solanum tuberosum HOM05D008450 ORTHO05D007977 3.9e-08 62.8 51 60.8
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 6.7e-08 62.0 97 38.1
PGSC0003DMG400038439 Solanum tuberosum HOM05D008450 ORTHO05D009935 8.7e-08 61.6 46 67.4
PGSC0003DMG400040093 Solanum tuberosum HOM05D000303 ORTHO05D000570 1.1e-07 61.2 45 68.9
PGSC0003DMG400043969 Solanum tuberosum HOM05D000303 ORTHO05D000570 1.5e-07 60.8 47 63.8
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.5e-07 60.1 85 37.6
PGSC0003DMG400040371 Solanum tuberosum HOM05D008450 ORTHO05D007977 2.5e-07 60.1 45 64.4
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 3.3e-07 59.7 180 29.4
PGSC0003DMG400045307 Solanum tuberosum HOM05D008450 ORTHO05D007977 3.3e-07 59.7 72 44.4
PGSC0003DMG400035069 Solanum tuberosum HOM05D000303 ORTHO05D000570 5.6e-07 58.9 45 68.9
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 5.6e-07 58.9 81 40.7
PGSC0003DMG400036483 Solanum tuberosum HOM05D008450 ORTHO05D007977 7.4e-07 58.5 45 64.4
PGSC0003DMG400039359 Solanum tuberosum HOM05D000303 ORTHO05D000977 7.4e-07 58.5 39 74.4
PGSC0003DMG400039675 Solanum tuberosum HOM05D008450 ORTHO05D007977 7.4e-07 58.5 42 71.4
PGSC0003DMG400021794 Solanum tuberosum HOM05D007862 ORTHO05D007977 9.6e-07 58.2 45 66.7
PGSC0003DMG400021974 Solanum tuberosum HOM05D008450 ORTHO05D007977 9.6e-07 58.2 43 62.8
PGSC0003DMG400036929 Solanum tuberosum HOM05D008450 ORTHO05D007977 1.6e-06 57.4 67 52.2
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 2.1e-06 57.0 125 29.6
PGSC0003DMG400040551 Solanum tuberosum HOM05D008450 ORTHO05D007977 2.1e-06 57.0 40 70.0
PGSC0003DMG400040669 Solanum tuberosum HOM05D008450 ORTHO05D007977 3.6e-06 56.2 45 60.0
PGSC0003DMG400044466 Solanum tuberosum HOM05D008450 ORTHO05D007977 3.6e-06 56.2 44 63.6
PGSC0003DMG400046608 Solanum tuberosum HOM05D000303 ORTHO05D007977 3.6e-06 56.2 44 61.4
PGSC0003DMG400039533 Solanum tuberosum HOM05D008450 ORTHO05D007977 4.8e-06 55.8 31 83.9
PGSC0003DMG400037264 Solanum tuberosum HOM05D008450 ORTHO05D007977 6.2e-06 55.5 39 69.2
PGSC0003DMG400045052 Solanum tuberosum HOM05D000303 ORTHO05D000570 8.1e-06 55.1 38 71.1
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 8.1e-06 55.1 105 33.3


User provided reference genes

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