Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 1.3e-255 885.9 462 100.0
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 3.2e-246 854.7 462 97.0
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.3e-244 849.4 462 96.1
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.3e-207 726.5 465 83.2
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 5.9e-192 674.5 414 85.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 5.4e-169 598.2 474 66.0
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 9.2e-169 597.4 496 64.5
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 7.7e-168 594.3 472 63.8
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.0e-167 594.0 495 64.4
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.7e-167 593.2 472 66.5
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.7e-167 593.2 467 65.5
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.1e-166 590.5 468 64.3
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 1.9e-166 589.7 467 66.6
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 1.9e-166 589.7 467 66.6
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 4.3e-166 588.6 469 66.1
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 5.6e-166 588.2 467 66.8
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.6e-165 586.6 472 65.7
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 2.8e-165 585.9 465 64.7
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 4.7e-165 585.1 466 65.2
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.0e-164 582.4 464 67.0
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 8.9e-164 580.9 467 66.6
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.5e-163 580.1 464 66.8
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 1.5e-163 580.1 467 65.7
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 3.4e-163 578.9 463 66.5
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 5.7e-163 578.2 465 64.9
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 7.5e-163 577.8 470 65.3
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 9.8e-163 577.4 466 65.2
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 4.9e-162 575.1 466 66.1
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 8.3e-162 574.3 497 62.4
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.1e-161 573.9 467 66.8
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.4e-161 573.5 487 62.4
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 5.4e-161 571.6 482 63.1
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 7.0e-161 571.2 469 64.6
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 5.9e-160 568.2 470 64.3
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 7.8e-160 567.8 480 63.5
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 3.9e-159 565.5 466 64.6
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 8.6e-159 564.3 464 64.2
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 1.5e-158 563.5 468 63.9
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 5.6e-158 561.6 475 63.4
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 5.6e-158 561.6 468 63.2
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 7.3e-158 561.2 476 63.7
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 2.1e-157 559.7 464 63.8
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 3.6e-157 558.9 465 63.0
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 3.6e-157 558.9 467 64.0
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 4.7e-157 558.5 470 62.1
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 6.2e-157 558.1 466 64.2
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.0e-156 557.4 464 63.4
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.0e-156 557.4 460 63.3
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.8e-156 556.6 485 61.0
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 2.3e-156 556.2 466 62.7
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 3.1e-156 555.8 467 63.2
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.2e-154 549.7 464 62.1
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 2.9e-154 549.3 484 61.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 3.7e-154 548.9 466 61.8
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 8.3e-154 547.7 467 62.3
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.9e-153 546.6 470 62.8
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 2.4e-153 546.2 466 61.6
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 7.0e-153 544.7 640 50.5
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 2.0e-152 543.1 464 61.2
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 2.7e-152 542.7 328 87.2
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 7.8e-152 541.2 462 60.6
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.3e-151 540.4 462 61.7
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 6.6e-151 538.1 442 64.5
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 2.5e-150 536.2 465 61.1
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 2.5e-150 536.2 462 61.3
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 3.3e-150 535.8 465 61.1
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 5.6e-150 535.0 464 60.1
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 1.2e-149 533.9 462 60.6
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 4.7e-149 531.9 465 61.1
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.8e-148 530.0 462 61.3
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.8e-148 530.0 462 60.2
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 2.3e-148 529.6 462 61.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 2.0e-147 526.6 465 60.0
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 2.2e-146 523.1 461 61.0
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 3.7e-146 522.3 461 60.5
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 4.9e-146 521.9 466 59.0
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.1e-145 520.8 463 60.9
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 7.1e-145 518.1 474 58.0
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 9.2e-145 517.7 482 55.6
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 6.0e-144 515.0 427 64.2
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 2.3e-143 513.1 461 59.4
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 6.8e-140 501.5 478 56.9
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.5e-139 500.4 482 57.1
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.1e-137 494.2 467 58.2
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.1e-137 492.3 430 62.8
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 4.6e-136 488.8 466 57.1
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.0e-135 487.6 347 75.8
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 4.0e-132 475.7 368 65.2
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 6.9e-132 474.9 486 52.5
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 4.6e-128 462.2 474 52.7
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 6.0e-128 461.8 387 61.5
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 1.4e-124 450.7 459 52.5
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 5.3e-124 448.7 467 51.6
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 6.9e-124 448.4 317 71.9
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 9.0e-124 448.0 467 51.6
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 1.5e-123 447.2 464 54.1
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 5.1e-119 432.2 363 63.9
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.6e-117 427.2 331 67.1
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 3.1e-116 422.9 477 49.7
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.7e-114 417.2 339 64.0
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 9.0e-108 394.8 514 47.5
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 7.9e-104 381.7 324 64.2
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 5.9e-91 339.0 359 52.6
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.3e-85 321.2 308 60.1
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.7e-85 320.9 348 52.0
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 8.2e-85 318.5 265 64.2
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 1.2e-83 314.7 492 39.0
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 6.1e-80 302.4 219 68.9
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 2.2e-74 283.9 428 39.7
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 7.2e-65 252.3 342 45.9
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 2.4e-60 237.3 492 32.1
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 1.3e-45 188.3 493 32.3
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 4.6e-43 179.9 160 58.1
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.1e-41 175.3 197 51.8
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.8e-39 167.9 143 67.1
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 5.6e-33 146.4 502 27.1
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 1.9e-28 131.3 102 71.6
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.1e-24 117.9 126 52.4
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 3.6e-24 117.1 437 27.2
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 3.6e-24 117.1 401 24.4
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 4.0e-23 113.6 84 69.0
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 9.9e-22 109.0 375 30.7
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 7.1e-20 102.8 81 60.5
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 9.2e-20 102.4 82 63.4
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 3.5e-19 100.5 81 60.5
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.1e-17 95.5 100 52.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 6.0e-11 73.2 72 48.6
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 1.5e-09 68.6 72 45.8


User provided reference genes

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