Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022794 Solanum tuberosum HOM05D017667 ORTHO05D020310 4.6e-36 154.1 80 100.0
Sopen01g001210 Solanum pennellii HOM05D017667 ORTHO05D020310 2.5e-34 148.3 80 96.2
Solyc01g005180.1 Solanum lycopersicum HOM05D017667 ORTHO05D020310 3.3e-34 147.9 80 96.2
CAN.G282.113 Capsicum annuum HOM05D017667 ORTHO05D020310 3.1e-32 141.4 80 92.5
Nitab4.5_0000538g0080 Nicotiana tabacum HOM05D017667 ORTHO05D020310 3.3e-26 121.3 80 80.0
Nitab4.5_0000640g0020 Nicotiana tabacum HOM05D017667 ORTHO05D020310 3.3e-26 121.3 80 80.0
Peaxi162Scf00193g00134 Petunia axillaris HOM05D017667 ORTHO05D020310 8.2e-17 90.1 81 64.2
Nitab4.5_0001437g0150 Nicotiana tabacum HOM05D003360 ORTHO05D003759 6.1e-12 73.9 74 54.1
Solyc11g007100.1 Solanum lycopersicum HOM05D003360 ORTHO05D003759 6.1e-12 73.9 74 54.1
Sopen11g003020 Solanum pennellii HOM05D003360 ORTHO05D003759 6.1e-12 73.9 74 54.1
Nitab4.5_0003774g0050 Nicotiana tabacum HOM05D003360 ORTHO05D003759 1.5e-10 69.3 74 51.4
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 2.4e-08 62.0 59 62.7
Lsat_1_v5_gn_2_104661 Lactuca sativa HOM05D001901 ORTHO05D001850 2.4e-08 62.0 67 50.7
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 5.3e-08 60.8 69 55.1
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 9.1e-08 60.1 73 50.7
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 9.1e-08 60.1 74 54.1
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 9.1e-08 60.1 72 56.9
Thecc.10G106800 Theobroma cacao HOM05D003360 ORTHO05D003759 2.7e-07 58.5 73 47.9
CSS0011540 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 4.5e-07 57.8 72 50.0
PGR004G2902 Punica granatum HOM05D003360 ORTHO05D003759 5.9e-07 57.4 80 46.2
ECA238G0205 Erigeron canadensis HOM05D003360 ORTHO05D003759 7.7e-07 57.0 57 52.6
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 7.7e-07 57.0 64 53.1
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 7.7e-07 57.0 64 53.1
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 7.7e-07 57.0 64 53.1
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 7.7e-07 57.0 64 53.1
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 7.7e-07 57.0 72 48.6
arahy.Tifrunner.gnm1.ann1.3KS0IU Arachis hypogaea HOM05D003360 ORTHO05D003759 1.0e-06 56.6 47 63.8
arahy.Tifrunner.gnm1.ann1.W71F47 Arachis hypogaea HOM05D003360 ORTHO05D003759 1.0e-06 56.6 47 63.8
DCAR_003370 Daucus carota HOM05D003360 ORTHO05D003759 1.0e-06 56.6 47 61.7
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 1.0e-06 56.6 64 53.1
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.3e-06 56.2 74 50.0
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 1.3e-06 56.2 74 50.0
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 1.3e-06 56.2 65 53.8
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 1.7e-06 55.8 81 46.9
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.7e-06 55.8 67 52.2
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 1.7e-06 55.8 53 66.0
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 2.2e-06 55.5 83 47.0
Lj1g0000501 Lotus japonicus HOM05D003360 ORTHO05D003759 2.2e-06 55.5 62 50.0
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 2.2e-06 55.5 59 54.2
CSS0023349 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 2.9e-06 55.1 50 60.0
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 2.9e-06 55.1 74 48.6
Gohir.D12G091360 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.9e-06 55.1 45 62.2
Gorai.008G098900 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.9e-06 55.1 45 62.2
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 2.9e-06 55.1 67 50.7
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 3.8e-06 54.7 76 43.4
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 3.8e-06 54.7 50 62.0
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 3.8e-06 54.7 77 48.1
Migut.L01772 Erythranthe guttata HOM05D003360 ORTHO05D003759 5.0e-06 54.3 47 61.7
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 5.0e-06 54.3 81 45.7
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 6.5e-06 53.9 76 43.4
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 6.5e-06 53.9 63 52.4
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 6.5e-06 53.9 63 52.4
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 6.5e-06 53.9 63 52.4
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 6.5e-06 53.9 76 47.4
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 6.5e-06 53.9 76 47.4
Oeu061778.1 Olea europaea HOM05D003360 ORTHO05D003759 6.5e-06 53.9 73 43.8
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 8.5e-06 53.5 68 50.0
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 8.5e-06 53.5 66 51.5
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 8.5e-06 53.5 79 46.8
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 8.5e-06 53.5 76 46.1
Gohir.A12G092744 Gossypium hirsutum HOM05D003360 ORTHO05D003759 8.5e-06 53.5 45 60.0
Manes.09G056502 Manihot esculenta HOM05D003360 ORTHO05D003759 8.5e-06 53.5 63 50.8
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 8.5e-06 53.5 76 43.4
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 8.5e-06 53.5 61 52.5


User provided reference genes

Program Settings