Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 3.8e-108 396.4 203 100.0
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.2e-101 374.8 203 95.6
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 1.3e-89 334.7 202 86.1
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 8.2e-55 219.2 200 58.5
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 2.4e-54 217.6 207 56.0
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 3.1e-54 217.2 201 56.2
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 4.5e-53 213.4 200 55.5
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 7.7e-53 212.6 200 57.0
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 1.3e-52 211.8 205 54.1
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 1.3e-52 211.8 206 55.3
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 1.5e-51 208.4 206 54.4
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 4.2e-51 206.8 199 54.8
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 7.2e-51 206.1 199 55.3
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 2.1e-50 204.5 192 55.7
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 3.6e-50 203.8 210 53.3
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 1.0e-49 202.2 205 51.7
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 1.8e-49 201.4 193 53.4
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 2.3e-49 201.1 209 50.2
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 3.0e-49 200.7 204 51.0
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 8.8e-49 199.1 182 54.9
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 8.8e-49 199.1 196 54.1
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.5e-48 198.4 196 54.1
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.0e-48 198.0 195 52.3
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 3.4e-48 197.2 207 49.3
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 3.4e-48 197.2 196 53.1
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 9.8e-48 195.7 199 50.8
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.3e-47 195.3 195 51.8
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 1.7e-47 194.9 201 49.3
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.7e-47 194.9 195 51.8
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 2.8e-47 194.1 193 51.3
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 1.1e-46 192.2 200 50.0
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.8e-46 191.4 195 50.8
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 5.4e-46 189.9 203 48.8
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 5.4e-46 189.9 199 49.2
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 7.0e-46 189.5 206 50.0
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 1.6e-45 188.3 201 49.8
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 2.0e-45 188.0 199 48.7
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 2.0e-45 188.0 204 47.5
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 2.0e-45 188.0 204 48.5
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.7e-45 187.6 197 50.8
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.7e-45 187.6 197 50.8
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 4.5e-45 186.8 205 48.8
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 7.7e-45 186.0 197 46.7
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.9e-44 184.1 197 49.7
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 5.0e-44 183.3 201 48.8
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 8.5e-44 182.6 199 48.2
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 1.5e-43 181.8 191 51.3
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 1.9e-43 181.4 198 48.5
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.9e-43 181.4 206 45.6
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.9e-43 181.4 197 47.2
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 4.2e-43 180.3 195 50.3
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 4.2e-43 180.3 199 49.2
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 5.5e-43 179.9 202 48.0
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 9.5e-43 179.1 204 46.1
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 9.5e-43 179.1 204 46.1
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 2.1e-42 177.9 199 45.7
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 8.0e-42 176.0 194 48.5
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 2.3e-41 174.5 203 46.8
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 4.0e-41 173.7 191 48.2
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 1.5e-40 171.8 199 47.7
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 2.0e-40 171.4 153 56.2
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 2.6e-40 171.0 199 48.2
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 1.1e-38 165.6 197 45.2
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.8e-38 164.9 199 45.7
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 2.5e-35 154.5 201 43.3
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 3.6e-34 150.6 85 84.7
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.8e-33 148.3 85 82.4
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 4.4e-32 143.7 195 43.6
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 5.4e-30 136.7 185 45.4
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 5.4e-30 136.7 109 56.9
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 8.6e-28 129.4 190 41.1
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 2.5e-27 127.9 202 39.6
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 5.6e-27 126.7 209 36.8
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 2.1e-26 124.8 114 48.2
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 2.8e-26 124.4 203 43.3
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 1.8e-25 121.7 170 42.9
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 5.2e-25 120.2 216 39.4
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 1.3e-23 115.5 141 41.8
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 3.0e-20 104.4 85 54.1
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 3.0e-20 104.4 85 54.1
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 6.6e-20 103.2 196 37.2
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 3.6e-18 97.4 138 41.3
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.2e-16 92.4 85 47.1
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 7.5e-16 89.7 85 44.7
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 1.1e-14 85.9 86 44.2
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 1.2e-13 82.4 59 62.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 9.5e-11 72.8 186 30.1
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 4.7e-10 70.5 136 30.9
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 1.4e-09 68.9 192 27.1
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 6.8e-09 66.6 170 25.3
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 2.0e-08 65.1 213 24.9
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 2.0e-08 65.1 213 24.9
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 2.0e-08 65.1 182 30.2
PSO675G0716 Papaver somniferum HOM05D000162 ORTHO05D000090 5.8e-08 63.5 128 28.1
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 9.9e-08 62.8 116 31.0
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 2.2e-07 61.6 190 24.2
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.9e-07 61.2 191 26.7
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 3.8e-07 60.8 199 25.1
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 4.9e-07 60.5 165 27.3
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 4.9e-07 60.5 189 24.9
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 8.4e-07 59.7 175 26.3
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 8.4e-07 59.7 189 24.3
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 8.4e-07 59.7 187 24.6
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 1.1e-06 59.3 122 31.1
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 1.1e-06 59.3 161 31.1
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 1.1e-06 59.3 161 31.1
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 1.4e-06 58.9 96 29.2
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.4e-06 58.9 170 23.5
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.4e-06 58.9 116 28.4
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 1.9e-06 58.5 106 24.5
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 1.9e-06 58.5 107 29.9
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 2.4e-06 58.2 101 30.7
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 2.4e-06 58.2 169 29.6
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 2.4e-06 58.2 186 25.3
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 3.2e-06 57.8 168 25.6
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 3.2e-06 57.8 96 28.1
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 4.1e-06 57.4 172 26.2
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 4.1e-06 57.4 116 30.2
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 4.1e-06 57.4 87 34.5
HanXRQChr04g0120331 Helianthus annuus HOM05D002986 ORTHO05D003966 4.1e-06 57.4 147 28.6
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 4.1e-06 57.4 98 34.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.4e-06 57.0 186 26.3
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 5.4e-06 57.0 156 26.3
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 7.1e-06 56.6 118 26.3
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 7.1e-06 56.6 110 28.2
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 9.2e-06 56.2 181 25.4
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 9.2e-06 56.2 96 28.1
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 9.2e-06 56.2 193 24.4
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 9.2e-06 56.2 108 27.8
Rhsim08G0214900 Rhododendron simsii HOM05D006819 ORTHO05D008763 9.2e-06 56.2 108 30.6
SGA_v2.0_scaffold33G13374 Striga asiatica HOM05D000891 ORTHO05D000761 9.2e-06 56.2 158 26.6
THA.LOC104826985 Tarenaya hassleriana HOM05D000855 ORTHO05D008530 9.2e-06 56.2 110 26.4


User provided reference genes

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