Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.3e-55 219.5 115 100.0
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 4.4e-48 194.5 115 88.7
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 6.0e-45 184.1 115 83.5
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.3e-44 182.2 115 83.5
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.1e-42 175.6 115 81.7
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.1e-41 171.8 115 80.0
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 6.4e-39 164.1 113 77.0
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 3.3e-35 151.8 115 71.3
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 5.6e-35 151.0 115 71.3
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 5.6e-35 151.0 115 70.4
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 9.6e-35 150.2 115 71.3
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 6.9e-33 144.1 96 76.0
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.1e-29 132.5 100 67.0
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 3.5e-29 131.7 107 67.3
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 3.5e-29 131.7 68 92.6
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.0e-28 130.2 107 66.4
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 1.8e-28 129.4 116 62.1
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 8.7e-28 127.1 119 58.0
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.1e-27 126.7 91 65.9
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 1.5e-27 126.3 102 62.7
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 4.3e-27 124.8 107 62.6
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 2.8e-26 122.1 113 60.2
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 3.7e-26 121.7 102 59.8
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 6.3e-26 120.9 103 61.2
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 8.2e-26 120.6 98 59.2
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 1.1e-25 120.2 103 59.2
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 1.8e-25 119.4 106 60.4
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 2.4e-25 119.0 99 60.6
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 3.1e-25 118.6 110 59.1
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 3.1e-25 118.6 114 58.8
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 6.9e-25 117.5 110 58.2
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 6.9e-25 117.5 107 59.8
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 6.9e-25 117.5 107 59.8
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 6.9e-25 117.5 100 61.0
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 9.0e-25 117.1 110 59.1
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 9.0e-25 117.1 103 57.3
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 1.2e-24 116.7 98 62.2
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 1.2e-24 116.7 100 60.0
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.2e-24 116.7 92 65.2
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 2.0e-24 115.9 109 59.6
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 2.0e-24 115.9 103 61.2
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.6e-24 115.5 84 69.0
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 5.9e-24 114.4 100 61.0
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 5.9e-24 114.4 80 70.0
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 5.9e-24 114.4 80 70.0
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 1.3e-23 113.2 102 56.9
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 1.3e-23 113.2 94 60.6
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.3e-23 113.2 109 58.7
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.7e-23 112.8 98 59.2
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 1.7e-23 112.8 110 54.5
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 2.2e-23 112.5 110 59.1
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 2.2e-23 112.5 104 58.7
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 3.8e-23 111.7 94 59.6
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 3.8e-23 111.7 102 56.9
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 3.8e-23 111.7 102 56.9
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 3.8e-23 111.7 102 56.9
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 5.0e-23 111.3 100 61.0
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 6.5e-23 110.9 109 58.7
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 6.5e-23 110.9 109 58.7
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 6.5e-23 110.9 107 57.0
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 6.5e-23 110.9 96 58.3
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 6.5e-23 110.9 96 59.4
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 8.4e-23 110.5 96 59.4
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 1.1e-22 110.2 109 50.5
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 1.4e-22 109.8 110 58.2
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.9e-22 109.4 113 54.9
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 1.9e-22 109.4 65 75.4
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 3.2e-22 108.6 118 55.9
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 3.2e-22 108.6 101 57.4
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 3.2e-22 108.6 111 55.9
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 2.7e-21 105.5 110 52.7
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 2.7e-21 105.5 83 67.5
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 2.7e-21 105.5 120 51.7
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 4.6e-21 104.8 115 52.2
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 6.1e-21 104.4 104 53.8
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 1.0e-20 103.6 121 52.1
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 1.0e-20 103.6 97 57.7
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 1.3e-20 103.2 83 65.1
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 1.3e-20 103.2 97 55.7
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 1.8e-20 102.8 83 62.7
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.8e-20 102.8 107 55.1
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 2.3e-20 102.4 68 72.1
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.3e-20 102.4 109 54.1
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 2.3e-20 102.4 78 62.8
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 2.3e-20 102.4 107 53.3
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 3.0e-20 102.1 77 63.6
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 3.0e-20 102.1 72 68.1
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 3.0e-20 102.1 107 55.1
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 3.0e-20 102.1 107 55.1
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.9e-20 101.7 70 68.6
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 5.1e-20 101.3 113 54.9
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 6.7e-20 100.9 120 47.5
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 8.7e-20 100.5 89 55.1
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 1.1e-19 100.1 83 59.0
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 1.1e-19 100.1 115 50.4
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 1.5e-19 99.8 83 60.2
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.9e-19 99.4 107 52.3
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 1.9e-19 99.4 86 57.0
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.3e-19 98.6 83 59.0
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 3.3e-19 98.6 83 57.8
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 4.3e-19 98.2 83 57.8
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 7.4e-19 97.4 83 57.8
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 7.4e-19 97.4 112 48.2
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 2.2e-18 95.9 110 49.1
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 2.2e-18 95.9 110 49.1
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 2.2e-18 95.9 83 56.6
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 2.8e-18 95.5 84 57.1
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 2.8e-18 95.5 84 57.1
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 2.8e-18 95.5 84 57.1
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 3.7e-18 95.1 83 59.0
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 4.8e-18 94.7 83 57.8
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 4.8e-18 94.7 83 57.8
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 6.3e-18 94.4 84 59.5
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.3e-18 94.4 69 63.8
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.3e-18 94.4 69 63.8
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 6.3e-18 94.4 79 59.5
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.1e-17 93.6 100 51.0
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 1.8e-17 92.8 84 56.0
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 9.0e-17 90.5 48 81.2
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 2.6e-16 89.0 81 58.0
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 4.5e-16 88.2 82 56.1
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 1.7e-15 86.3 59 69.5
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.6e-13 79.7 78 50.0
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 1.4e-12 76.6 64 51.6
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 3.9e-12 75.1 54 70.4
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 8.2e-10 67.4 89 39.3
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 1.5e-08 63.2 70 44.3
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 1.1e-06 57.0 54 57.4


User provided reference genes

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