Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022543 Solanum tuberosum HOM05D022406 ORTHO05D011689 1.0e-73 280.0 143 100.0
Sopen03g006540 Solanum pennellii HOM05D022406 ORTHO05D011689 9.1e-51 203.8 142 72.5
Solyc03g033750.2 Solanum lycopersicum HOM05D022406 ORTHO05D011689 1.0e-49 200.3 142 70.4
PGSC0003DMG400022592 Solanum tuberosum HOM05D000126 ORTHO05D011689 1.6e-34 149.8 165 50.3
Solyc03g033795.1 Solanum lycopersicum HOM05D000126 ORTHO05D011689 1.8e-30 136.3 156 47.4
CAN.G753.5 Capsicum annuum HOM05D000126 ORTHO05D011689 1.8e-27 126.3 165 50.3
Nitab4.5_0000344g0150 Nicotiana tabacum HOM05D000126 ORTHO05D011689 3.0e-25 119.0 158 48.7
Solyc03g033770.1 Solanum lycopersicum HOM05D022406 ORTHO05D011689 3.7e-20 102.1 119 51.3
Nitab4.5_0008224g0010 Nicotiana tabacum HOM05D000126 ORTHO05D000085 5.0e-17 91.7 141 41.1
Peaxi162Scf00010g00107 Petunia axillaris HOM05D000126 ORTHO05D000085 5.0e-17 91.7 141 41.1
Sopen03g006560 Solanum pennellii HOM05D000126 ORTHO05D000085 1.1e-16 90.5 144 41.0
Nitab4.5_0002828g0140 Nicotiana tabacum HOM05D000126 ORTHO05D011689 1.5e-16 90.1 140 41.4
Solyc02g062550.3 Solanum lycopersicum HOM05D000126 ORTHO05D000085 1.5e-16 90.1 146 40.4
Nitab4.5_0000344g0120 Nicotiana tabacum HOM05D000126 ORTHO05D000085 1.9e-16 89.7 141 40.4
Sopen02g013560 Solanum pennellii HOM05D000126 ORTHO05D000085 3.3e-16 89.0 146 39.7
Solyc03g033790.4 Solanum lycopersicum HOM05D000126 ORTHO05D000085 4.3e-16 88.6 148 39.2
Lj4A208T83 Lonicera japonica HOM05D000126 ORTHO05D000085 7.3e-16 87.8 169 39.6
Nitab4.5_0001525g0020 Nicotiana tabacum HOM05D000126 ORTHO05D000085 7.3e-16 87.8 139 38.8
Nitab4.5_0000136g0240 Nicotiana tabacum HOM05D000126 ORTHO05D000085 9.5e-16 87.4 141 38.3
Peaxi162Scf00010g01113 Petunia axillaris HOM05D000126 ORTHO05D000085 9.5e-16 87.4 139 39.6
CAN.G1034.15 Capsicum annuum HOM05D000126 ORTHO05D000085 1.2e-15 87.0 144 39.6
Peaxi162Scf00008g03319 Petunia axillaris HOM05D000126 ORTHO05D000085 1.6e-15 86.7 166 38.0
PGSC0003DMG400015492 Solanum tuberosum HOM05D000126 ORTHO05D000085 2.1e-15 86.3 146 40.4
PGSC0003DMG400022574 Solanum tuberosum HOM05D000126 ORTHO05D000085 3.6e-15 85.5 169 35.5
CAN.G1019.5 Capsicum annuum HOM05D000126 ORTHO05D000085 8.1e-15 84.3 166 37.3
Oeu023327.1 Olea europaea HOM05D000126 ORTHO05D000085 1.1e-14 84.0 166 37.3
Sopen10g030270 Solanum pennellii HOM05D000126 ORTHO05D000085 1.4e-14 83.6 130 38.5
Sopen03g006600 Solanum pennellii HOM05D000126 ORTHO05D000085 1.8e-14 83.2 173 34.1
Nitab4.5_0001665g0060 Nicotiana tabacum HOM05D000126 ORTHO05D011689 2.3e-14 82.8 78 60.3
Actinidia19206 Actinidia chinensis HOM05D000126 ORTHO05D000085 6.8e-14 81.3 144 36.8
Solyc10g079630.1 Solanum lycopersicum HOM05D000126 ORTHO05D000085 6.8e-14 81.3 130 38.5
PGSC0003DMG400022572 Solanum tuberosum HOM05D000126 ORTHO05D000085 3.4e-13 79.0 166 34.9
Nitab4.5_0001159g0220 Nicotiana tabacum HOM05D000126 ORTHO05D000085 4.4e-13 78.6 141 36.9
FAN23G2993 Fragaria x ananassa HOM05D000126 ORTHO05D000085 5.8e-13 78.2 133 36.8
Sopen03g006570 Solanum pennellii HOM05D000126 ORTHO05D000085 7.5e-13 77.8 146 35.6
CAN.G641.56 Capsicum annuum HOM05D000126 ORTHO05D000085 9.9e-13 77.4 130 39.2
FAN28G2564 Fragaria x ananassa HOM05D000126 ORTHO05D000085 9.9e-13 77.4 133 36.8
Sopen03g006590 Solanum pennellii HOM05D000126 ORTHO05D000085 9.9e-13 77.4 166 34.3
Peaxi162Scf00477g00822 Petunia axillaris HOM05D000126 ORTHO05D000085 1.7e-12 76.6 175 33.7
PGSC0003DMG400022573 Solanum tuberosum HOM05D000126 ORTHO05D000085 1.7e-12 76.6 166 34.3
vmacro17804 Vaccinium macrocarpon HOM05D000126 ORTHO05D000085 2.9e-12 75.9 138 38.4
Actinidia35626 Actinidia chinensis HOM05D000126 ORTHO05D000085 3.7e-12 75.5 173 33.5
CSS0036554 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 4.9e-12 75.1 139 35.3
CANSAT01G1508 Cannabis sativa HOM05D000126 ORTHO05D000085 4.9e-12 75.1 142 36.6
Nitab4.5_0001167g0020 Nicotiana tabacum HOM05D000126 ORTHO05D000085 4.9e-12 75.1 140 35.0
Prupe.7G158900 Prunus persica HOM05D000126 ORTHO05D000085 4.9e-12 75.1 134 38.1
MD02G1142300 Malus domestica HOM05D000126 ORTHO05D000085 6.4e-12 74.7 142 38.7
Dinv40021 Davidia involucrata HOM05D000126 ORTHO05D000085 8.3e-12 74.3 144 36.1
Nitab4.5_0001665g0040 Nicotiana tabacum HOM05D000126 ORTHO05D000085 8.3e-12 74.3 173 34.1
Duzib264G0526 Durio zibethinus HOM05D000126 ORTHO05D000085 1.1e-11 73.9 142 36.6
TAR628G1689 Trochodendron aralioides HOM05D000126 ORTHO05D000085 1.1e-11 73.9 142 33.8
FvH4_1g12742 Fragaria vesca HOM05D000126 ORTHO05D000085 1.4e-11 73.6 133 35.3
FAN19G3100 Fragaria x ananassa HOM05D000126 ORTHO05D000085 1.4e-11 73.6 133 35.3
Sabra07G0017900 Salix brachista HOM05D000126 ORTHO05D000085 1.4e-11 73.6 139 37.4
Cfa006898 Carpinus fangiana HOM05D000126 ORTHO05D000085 1.9e-11 73.2 168 32.7
SGA_v2.0_scaffold51G18820 Striga asiatica HOM05D000126 ORTHO05D000085 1.9e-11 73.2 142 34.5
Haze_03854 Corylus avellana HOM05D000126 ORTHO05D000085 2.4e-11 72.8 168 32.7
Potri.007G020900 Populus trichocarpa HOM05D000126 ORTHO05D000085 2.4e-11 72.8 139 37.4
MELO3C007857.2 Cucumis melo HOM05D000126 ORTHO05D000085 3.2e-11 72.4 137 38.7
Nitab4.5_0014007g0010 Nicotiana tabacum HOM05D000126 ORTHO05D011689 4.1e-11 72.0 100 42.0
RcHm_v2.0_Chr2g0100831 Rosa chinensis HOM05D000126 ORTHO05D000085 4.1e-11 72.0 171 31.6
CsaV3_6G046590 Cucumis sativus L. HOM05D000126 ORTHO05D000085 5.4e-11 71.6 137 37.2
Thecc.01G029700 Theobroma cacao HOM05D000126 ORTHO05D000085 5.4e-11 71.6 131 37.4
MSTRG.23250 Avicennia marina HOM05D000126 ORTHO05D000085 7.1e-11 71.2 144 36.1
Migut.H02522 Erythranthe guttata HOM05D000126 ORTHO05D000085 7.1e-11 71.2 164 31.1
Rhsim08G0121500 Rhododendron simsii HOM05D000126 ORTHO05D000085 1.2e-10 70.5 116 38.8
CiPaw.08G139500 Carya illinoinensis HOM05D000126 ORTHO05D000085 1.6e-10 70.1 168 33.9
Nitab4.5_0003381g0070 Nicotiana tabacum HOM05D000126 ORTHO05D000085 2.1e-10 69.7 124 34.7
QL06p035371 Quercus lobata HOM05D000126 ORTHO05D000085 2.1e-10 69.7 142 35.2
MSTRG.2486 Avicennia marina HOM05D000126 ORTHO05D011689 3.5e-10 68.9 115 37.4
Glyma.02G053600 Glycine max HOM05D000126 ORTHO05D000085 3.5e-10 68.9 142 33.8
TAR376G0264 Trochodendron aralioides HOM05D000126 ORTHO05D000085 4.6e-10 68.6 142 33.1
TAR376G0440 Trochodendron aralioides HOM05D000126 ORTHO05D000085 4.6e-10 68.6 142 33.1
Migut.H02521 Erythranthe guttata HOM05D000126 ORTHO05D000085 6.0e-10 68.2 160 30.6
ClCG01G019860 Citrullus lanatus HOM05D000126 ORTHO05D000085 7.8e-10 67.8 163 33.1
Nn1g04905 Nelumbo nucifera HOM05D000126 ORTHO05D000085 7.8e-10 67.8 169 31.4
COL.COLO4_22025 Corchorus olitorius HOM05D000126 ORTHO05D000085 1.0e-09 67.4 130 37.7
RcHm_v2.0_Chr2g0100841 Rosa chinensis HOM05D000126 ORTHO05D000085 1.0e-09 67.4 173 31.2
TAR629G2805 Trochodendron aralioides HOM05D000126 ORTHO05D000085 1.0e-09 67.4 141 33.3
BcaC07g39564 Brassica carinata HOM05D000126 ORTHO05D000085 1.3e-09 67.0 110 39.1
CANSAT01G0037 Cannabis sativa HOM05D000126 ORTHO05D000085 1.3e-09 67.0 125 35.2
DCAR_025969 Daucus carota HOM05D000126 ORTHO05D000085 1.7e-09 66.6 131 31.3
DCAR_025970 Daucus carota HOM05D000126 ORTHO05D000085 3.0e-09 65.9 131 32.1
PGR119G0810 Punica granatum HOM05D000126 ORTHO05D000085 3.0e-09 65.9 139 33.8
arahy.Tifrunner.gnm1.ann1.GE8ZA7 Arachis hypogaea HOM05D000126 ORTHO05D000085 3.9e-09 65.5 131 34.4
arahy.Tifrunner.gnm1.ann1.QG71SU Arachis hypogaea HOM05D000126 ORTHO05D000085 3.9e-09 65.5 131 34.4
Cc07_g09930 Coffea canephora HOM05D000126 ORTHO05D000085 3.9e-09 65.5 143 35.7
CANSAT01G1202 Cannabis sativa HOM05D000126 ORTHO05D000085 5.1e-09 65.1 125 35.2
Phvul.003G256600 Phaseolus vulgaris HOM05D000126 ORTHO05D000085 5.1e-09 65.1 139 33.8
Sp5g11280 Schrenkiella parvula HOM05D000126 ORTHO05D000085 6.6e-09 64.7 129 34.9
C08p26200 Brassica napus HOM05D000126 ORTHO05D000085 1.1e-08 63.9 129 35.7
BolC8t50238H Brassica oleracea HOM05D000126 ORTHO05D000085 1.1e-08 63.9 129 35.7
Ca_22333_v3 Cicer arietinum L. HOM05D000126 ORTHO05D000085 1.1e-08 63.9 118 33.9
Ca_22337_v3 Cicer arietinum L. HOM05D000126 ORTHO05D000085 1.1e-08 63.9 118 33.9
FAN20G2870 Fragaria x ananassa HOM05D000126 ORTHO05D000085 1.5e-08 63.5 168 29.8
Sed0018692 Sechium edule HOM05D000126 ORTHO05D000085 1.5e-08 63.5 131 32.8
TAR376G0003 Trochodendron aralioides HOM05D000126 ORTHO05D011689 1.5e-08 63.5 106 38.7
DCAR_025972 Daucus carota HOM05D000126 ORTHO05D000085 1.9e-08 63.2 131 30.5
TAR376G0256 Trochodendron aralioides HOM05D000126 ORTHO05D011689 1.9e-08 63.2 102 36.3
Carub.0005s1732 Capsella rubella HOM05D000126 ORTHO05D000085 2.5e-08 62.8 129 34.1
BcaB01g00562 Brassica carinata HOM05D000126 ORTHO05D000085 3.3e-08 62.4 168 32.7
A03p48060 Brassica napus HOM05D000126 ORTHO05D000085 3.3e-08 62.4 129 34.9
A09p44060 Brassica napus HOM05D000126 ORTHO05D000085 3.3e-08 62.4 168 32.7
BraA03t13913Z Brassica rapa HOM05D000126 ORTHO05D000085 3.3e-08 62.4 129 34.9
BraA09t39864Z Brassica rapa HOM05D000126 ORTHO05D000085 3.3e-08 62.4 168 32.7
RcHm_v2.0_Chr6g0301551 Rosa chinensis HOM05D000126 ORTHO05D000085 3.3e-08 62.4 169 29.0
AT3G50930 Arabidopsis thaliana HOM05D000126 ORTHO05D000085 4.3e-08 62.0 168 31.5
COL.COLO4_22026 Corchorus olitorius HOM05D000126 ORTHO05D000085 4.3e-08 62.0 141 33.3
Ciclev10025530m.g Citrus clementina HOM05D000126 ORTHO05D000085 5.6e-08 61.6 127 33.1
C07p46080 Brassica napus HOM05D000126 ORTHO05D000085 9.5e-08 60.8 129 34.1
BolC7t45124H Brassica oleracea HOM05D000126 ORTHO05D000085 9.5e-08 60.8 129 34.1
FAN27G3306 Fragaria x ananassa HOM05D000126 ORTHO05D000085 9.5e-08 60.8 164 28.7
Glyma.16G133600 Glycine max HOM05D000126 ORTHO05D000085 9.5e-08 60.8 140 31.4
Gorai.005G245300 Gossypium raimondii HOM05D000126 ORTHO05D000085 9.5e-08 60.8 139 33.8
Cpa.g.sc6.169 Carica papaya HOM05D000126 ORTHO05D000085 1.2e-07 60.5 130 34.6
Lsat_1_v5_gn_9_51240 Lactuca sativa HOM05D000126 ORTHO05D000085 1.2e-07 60.5 134 32.8
Nitab4.5_0017290g0010 Nicotiana tabacum HOM05D000126 ORTHO05D000085 1.2e-07 60.5 120 37.5
Sc03g0003160 Simmondsia chinensis HOM05D000126 ORTHO05D000085 1.2e-07 60.5 137 31.4
AL113U10020 Arabidopsis lyrata HOM05D000126 ORTHO05D000085 1.6e-07 60.1 168 30.4
Eucgr.J02358 Eucalyptus grandis HOM05D000126 ORTHO05D000085 1.6e-07 60.1 137 29.2
Manes.01G138900 Manihot esculenta HOM05D000126 ORTHO05D000085 1.6e-07 60.1 129 33.3
Potri.007G020600 Populus trichocarpa HOM05D000126 ORTHO05D000085 1.6e-07 60.1 129 32.6
unitig_748.g8671 Utricularia gibba HOM05D000126 ORTHO05D000085 1.6e-07 60.1 140 30.0
CARHR153680 Cardamine hirsuta HOM05D000126 ORTHO05D000085 2.1e-07 59.7 136 31.6
Eucgr.J02369 Eucalyptus grandis HOM05D000126 ORTHO05D000085 2.1e-07 59.7 137 29.2
Gohir.D02G217300 Gossypium hirsutum HOM05D000126 ORTHO05D000085 2.1e-07 59.7 139 33.8
TAR376G0519 Trochodendron aralioides HOM05D000126 ORTHO05D000085 2.8e-07 59.3 174 28.2
ATR0585G068 Amborella trichopoda HOM05D000126 ORTHO05D000085 3.6e-07 58.9 128 29.7
CiPaw.11G161100 Carya illinoinensis HOM05D000126 ORTHO05D000085 3.6e-07 58.9 174 27.6
Cfa008161 Carpinus fangiana HOM05D000126 ORTHO05D011689 4.7e-07 58.5 87 43.7
CiPaw.07G158300 Carya illinoinensis HOM05D000126 ORTHO05D000085 6.2e-07 58.2 170 24.7
CiPaw.07G049800 Carya illinoinensis HOM05D000126 ORTHO05D000085 8.1e-07 57.8 166 30.1
Thhalv10010287m.g Eutrema salsugineum HOM05D000126 ORTHO05D000085 8.1e-07 57.8 124 33.1
Nn1g04902 Nelumbo nucifera HOM05D000126 ORTHO05D000085 8.1e-07 57.8 162 30.2
Thecc.02G081600 Theobroma cacao HOM05D000126 ORTHO05D000085 8.1e-07 57.8 130 33.8
Carub.0005s1733 Capsella rubella HOM05D000126 ORTHO05D000085 1.1e-06 57.4 123 32.5
Nitab4.5_0008224g0030 Nicotiana tabacum HOM05D000126 ORTHO05D011689 1.1e-06 57.4 67 55.2
DCAR_025968 Daucus carota HOM05D000126 ORTHO05D000085 1.4e-06 57.0 125 29.6
Lsat_1_v5_gn_2_77840 Lactuca sativa HOM05D000126 ORTHO05D000085 1.4e-06 57.0 134 30.6
Manes.01G139000 Manihot esculenta HOM05D000126 ORTHO05D000085 2.4e-06 56.2 164 29.9
Eucgr.I02402 Eucalyptus grandis HOM05D000126 ORTHO05D000085 3.1e-06 55.8 132 28.8
Hma1.2p1_2496F.1_g323280 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 3.1e-06 55.8 157 29.3
ATR0789G006 Amborella trichopoda HOM05D000126 ORTHO05D000085 4.0e-06 55.5 128 30.5
CARHR184140 Cardamine hirsuta HOM05D000126 ORTHO05D000085 4.0e-06 55.5 163 30.7
Aqoxy5G01577 Aquilegia oxysepala HOM05D000126 ORTHO05D000085 5.2e-06 55.1 168 29.8
Lsat_1_v5_gn_5_27140 Lactuca sativa HOM05D000126 ORTHO05D000085 5.2e-06 55.1 126 30.2
Prupe.7G159000 Prunus persica HOM05D000126 ORTHO05D000085 5.2e-06 55.1 139 30.9
Nitab4.5_0001665g0050 Nicotiana tabacum HOM05D000126 ORTHO05D011689 6.8e-06 54.7 96 40.6
AT3G50940 Arabidopsis thaliana HOM05D000126 ORTHO05D000085 8.9e-06 54.3 166 28.9
Eucgr.J02356 Eucalyptus grandis HOM05D000126 ORTHO05D000085 8.9e-06 54.3 137 28.5
Lsat_1_v5_gn_5_27160 Lactuca sativa HOM05D000126 ORTHO05D000085 8.9e-06 54.3 126 30.2
MBI10_g00766_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 8.9e-06 54.3 138 29.0
Sopen03g006550 Solanum pennellii HOM05D022406 ORTHO05D011689 8.9e-06 54.3 61 54.1


User provided reference genes

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